Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt spoIVCA and OKFHMN_22485 are separated by 302 nucleotides OKFHMN_22485 and OKFHMN_22490 are separated by 186 nucleotides OKFHMN_22490 and OKFHMN_22495 are separated by 669 nucleotides
OKFHMN_22480: spoIVCA - serine recombinase, at 4,373,202 to 4,373,828
spoIVCA
OKFHMN_22485: OKFHMN_22485 - hypothetical protein, at 4,374,131 to 4,374,307
_22485
OKFHMN_22490: OKFHMN_22490 - hypothetical protein, at 4,374,494 to 4,375,906
_22490
OKFHMN_22495: OKFHMN_22495 - Replication protein, at 4,376,576 to 4,377,223
_22495
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4373.530 kb on - strand, within spoIVCA at 4373.551 kb on - strand, within spoIVCA at 4373.571 kb on - strand, within spoIVCA at 4373.595 kb on - strand, within spoIVCA at 4373.622 kb on - strand, within spoIVCA at 4373.632 kb on - strand, within spoIVCA at 4373.673 kb on - strand, within spoIVCA at 4373.717 kb on - strand, within spoIVCA at 4373.717 kb on - strand, within spoIVCA at 4373.990 kb on - strand at 4373.990 kb on - strand at 4373.998 kb on - strand at 4373.998 kb on - strand at 4374.032 kb on + strand at 4374.033 kb on - strand at 4374.040 kb on - strand at 4374.161 kb on + strand, within OKFHMN_22485 at 4374.161 kb on + strand, within OKFHMN_22485 at 4374.161 kb on + strand, within OKFHMN_22485 at 4374.162 kb on - strand, within OKFHMN_22485 at 4374.168 kb on + strand, within OKFHMN_22485 at 4374.285 kb on + strand, within OKFHMN_22485 at 4374.289 kb on + strand, within OKFHMN_22485 at 4374.369 kb on + strand at 4374.465 kb on - strand at 4375.017 kb on + strand, within OKFHMN_22490 at 4375.383 kb on + strand, within OKFHMN_22490 at 4375.878 kb on + strand at 4376.225 kb on - strand at 4376.456 kb on - strand at 4376.522 kb on + strand at 4376.523 kb on - strand at 4376.523 kb on - strand at 4376.523 kb on - strand at 4376.574 kb on + strand at 4376.575 kb on - strand at 4376.578 kb on - strand at 4376.580 kb on + strand at 4376.581 kb on - strand at 4376.584 kb on - strand at 4376.643 kb on - strand, within OKFHMN_22495 at 4376.669 kb on + strand, within OKFHMN_22495 at 4376.670 kb on - strand, within OKFHMN_22495 at 4376.685 kb on - strand, within OKFHMN_22495 at 4376.685 kb on - strand, within OKFHMN_22495 at 4376.702 kb on + strand, within OKFHMN_22495 at 4376.830 kb on + strand, within OKFHMN_22495 at 4376.831 kb on - strand, within OKFHMN_22495 at 4376.888 kb on + strand, within OKFHMN_22495 at 4376.900 kb on + strand, within OKFHMN_22495
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,373,530 - spoIVCA OKFHMN_22480 0.52 +0.3 4,373,551 - spoIVCA OKFHMN_22480 0.56 -0.1 4,373,571 - spoIVCA OKFHMN_22480 0.59 -0.1 4,373,595 - spoIVCA OKFHMN_22480 0.63 -0.1 4,373,622 - spoIVCA OKFHMN_22480 0.67 +0.3 4,373,632 - spoIVCA OKFHMN_22480 0.69 +0.2 4,373,673 - spoIVCA OKFHMN_22480 0.75 -0.2 4,373,717 - spoIVCA OKFHMN_22480 0.82 -0.1 4,373,717 - spoIVCA OKFHMN_22480 0.82 -0.2 4,373,990 - +1.1 4,373,990 - -1.6 4,373,998 - +0.2 4,373,998 - +1.4 4,374,032 + -0.3 4,374,033 - +0.3 4,374,040 - +0.2 4,374,161 + OKFHMN_22485 0.17 -0.1 4,374,161 + OKFHMN_22485 0.17 +0.1 4,374,161 + OKFHMN_22485 0.17 -0.2 4,374,162 - OKFHMN_22485 0.18 -0.0 4,374,168 + OKFHMN_22485 0.21 +0.2 4,374,285 + OKFHMN_22485 0.87 -3.2 4,374,289 + OKFHMN_22485 0.89 -0.3 4,374,369 + +1.1 4,374,465 - +0.5 4,375,017 + OKFHMN_22490 0.37 +0.4 4,375,383 + OKFHMN_22490 0.63 -0.0 4,375,878 + +0.1 4,376,225 - +1.7 4,376,456 - -0.5 4,376,522 + +2.3 4,376,523 - +0.8 4,376,523 - -0.1 4,376,523 - -1.7 4,376,574 + +0.0 4,376,575 - -0.8 4,376,578 - -1.6 4,376,580 + +0.3 4,376,581 - +0.2 4,376,584 - -0.8 4,376,643 - OKFHMN_22495 0.10 +1.1 4,376,669 + OKFHMN_22495 0.14 +0.5 4,376,670 - OKFHMN_22495 0.15 +1.5 4,376,685 - OKFHMN_22495 0.17 -0.1 4,376,685 - OKFHMN_22495 0.17 -0.5 4,376,702 + OKFHMN_22495 0.19 +0.4 4,376,830 + OKFHMN_22495 0.39 +0.1 4,376,831 - OKFHMN_22495 0.39 -0.6 4,376,888 + OKFHMN_22495 0.48 +0.1 4,376,900 + OKFHMN_22495 0.50 +0.8
Or see this region's nucleotide sequence