Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22430

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntevgS and evgA are separated by 4 nucleotidesevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 388 nucleotides OKFHMN_22425: evgS - acid-sensing system histidine kinase EvgS, at 4,358,476 to 4,362,069 evgS OKFHMN_22430: evgA - acid-sensing system DNA-binding response regulator EvgA, at 4,362,074 to 4,362,688 evgA OKFHMN_22435: evgL - Protein EvgL, at 4,362,685 to 4,362,714 evgL OKFHMN_22440: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 4,363,103 to 4,364,266 emrK Position (kb) 4362 4363Strain fitness (log2 ratio) -2 -1 0 1at 4361.711 kb on - strandat 4361.789 kb on - strandat 4361.915 kb on - strandat 4361.923 kb on + strandat 4362.556 kb on + strand, within evgAat 4362.812 kb on - strandat 4362.833 kb on + strandat 4362.899 kb on - strandat 4363.196 kb on + strandat 4363.567 kb on + strand, within emrKat 4363.584 kb on + strand, within emrK

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,361,711 - -0.3
4,361,789 - -1.4
4,361,915 - +0.5
4,361,923 + +0.1
4,362,556 + evgA OKFHMN_22430 0.78 +0.1
4,362,812 - +0.8
4,362,833 + -2.3
4,362,899 - -0.1
4,363,196 + +0.3
4,363,567 + emrK OKFHMN_22440 0.40 -0.6
4,363,584 + emrK OKFHMN_22440 0.41 +0.0

Or see this region's nucleotide sequence