Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uraA and OKFHMN_21825 are separated by 49 nucleotides OKFHMN_21825 and arsC are separated by 137 nucleotides arsC and bepA are separated by 20 nucleotides
OKFHMN_21820: uraA - uracil permease, at 4,238,276 to 4,239,565
uraA
OKFHMN_21825: OKFHMN_21825 - DnaA regulatory inactivator Hda, at 4,239,615 to 4,240,361
_21825
OKFHMN_21830: arsC - arsenate reductase (glutaredoxin), at 4,240,499 to 4,240,858
arsC
OKFHMN_21835: bepA - beta-barrel assembly-enhancing protease, at 4,240,879 to 4,242,342
bepA
Position (kb) 4239
4240
4241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4238.691 kb on + strand, within uraA at 4238.692 kb on - strand, within uraA at 4238.761 kb on + strand, within uraA at 4238.765 kb on - strand, within uraA at 4238.930 kb on + strand, within uraA at 4238.931 kb on - strand, within uraA at 4238.932 kb on + strand, within uraA at 4238.932 kb on + strand, within uraA at 4239.004 kb on - strand, within uraA at 4239.025 kb on + strand, within uraA at 4239.029 kb on - strand, within uraA at 4239.083 kb on - strand, within uraA at 4239.137 kb on + strand, within uraA at 4239.176 kb on + strand, within uraA at 4239.181 kb on + strand, within uraA at 4239.182 kb on - strand, within uraA at 4239.353 kb on + strand, within uraA at 4239.354 kb on - strand, within uraA at 4239.420 kb on + strand, within uraA at 4239.448 kb on + strand at 4239.502 kb on + strand at 4239.503 kb on - strand at 4239.503 kb on - strand at 4239.552 kb on + strand at 4239.552 kb on + strand at 4239.553 kb on - strand at 4239.553 kb on - strand at 4239.563 kb on + strand at 4239.568 kb on + strand at 4240.359 kb on + strand at 4240.363 kb on + strand at 4240.407 kb on + strand at 4240.443 kb on - strand at 4240.483 kb on - strand at 4240.517 kb on + strand at 4240.880 kb on + strand at 4240.881 kb on - strand at 4240.890 kb on + strand at 4240.890 kb on + strand at 4240.899 kb on + strand at 4240.943 kb on + strand at 4241.124 kb on + strand, within bepA at 4241.124 kb on + strand, within bepA at 4241.131 kb on - strand, within bepA at 4241.152 kb on - strand, within bepA at 4241.152 kb on - strand, within bepA at 4241.310 kb on - strand, within bepA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,238,691 + uraA OKFHMN_21820 0.32 -0.3 4,238,692 - uraA OKFHMN_21820 0.32 +0.6 4,238,761 + uraA OKFHMN_21820 0.38 -1.7 4,238,765 - uraA OKFHMN_21820 0.38 -0.0 4,238,930 + uraA OKFHMN_21820 0.51 +0.4 4,238,931 - uraA OKFHMN_21820 0.51 +1.4 4,238,932 + uraA OKFHMN_21820 0.51 +1.0 4,238,932 + uraA OKFHMN_21820 0.51 -1.5 4,239,004 - uraA OKFHMN_21820 0.56 -1.9 4,239,025 + uraA OKFHMN_21820 0.58 -0.8 4,239,029 - uraA OKFHMN_21820 0.58 -0.1 4,239,083 - uraA OKFHMN_21820 0.63 +0.7 4,239,137 + uraA OKFHMN_21820 0.67 +0.2 4,239,176 + uraA OKFHMN_21820 0.70 +0.2 4,239,181 + uraA OKFHMN_21820 0.70 +0.8 4,239,182 - uraA OKFHMN_21820 0.70 -0.1 4,239,353 + uraA OKFHMN_21820 0.83 -1.0 4,239,354 - uraA OKFHMN_21820 0.84 +0.3 4,239,420 + uraA OKFHMN_21820 0.89 +2.7 4,239,448 + +0.7 4,239,502 + +0.7 4,239,503 - -0.4 4,239,503 - -0.6 4,239,552 + -1.2 4,239,552 + -1.0 4,239,553 - -2.9 4,239,553 - -0.1 4,239,563 + +0.1 4,239,568 + -0.3 4,240,359 + -0.1 4,240,363 + +1.6 4,240,407 + -1.0 4,240,443 - -0.0 4,240,483 - +0.8 4,240,517 + +1.0 4,240,880 + -0.2 4,240,881 - +0.5 4,240,890 + -0.3 4,240,890 + +0.0 4,240,899 + +0.5 4,240,943 + -2.8 4,241,124 + bepA OKFHMN_21835 0.17 -0.0 4,241,124 + bepA OKFHMN_21835 0.17 -2.3 4,241,131 - bepA OKFHMN_21835 0.17 -0.1 4,241,152 - bepA OKFHMN_21835 0.19 -1.6 4,241,152 - bepA OKFHMN_21835 0.19 -0.1 4,241,310 - bepA OKFHMN_21835 0.29 +0.0
Or see this region's nucleotide sequence