Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfhM and pbpC are separated by 0 nucleotides pbpC and bisC are separated by 163 nucleotides
OKFHMN_21675: yfhM - alpha2-macroglobulin, at 4,201,320 to 4,206,281
yfhM
OKFHMN_21680: pbpC - peptidoglycan glycosyltransferase PbpC, at 4,206,282 to 4,208,594
pbpC
OKFHMN_21685: bisC - dimethyl sulfoxide reductase subunit A, at 4,208,758 to 4,211,139
bisC
Position (kb) 4206
4207
4208
4209 Strain fitness (log2 ratio) -2
-1
0
1 at 4205.436 kb on - strand, within yfhM at 4205.648 kb on + strand, within yfhM at 4205.868 kb on - strand at 4205.894 kb on + strand at 4205.927 kb on - strand at 4206.055 kb on + strand at 4206.055 kb on + strand at 4206.083 kb on + strand at 4206.083 kb on + strand at 4206.159 kb on + strand at 4206.160 kb on - strand at 4206.189 kb on + strand at 4206.222 kb on + strand at 4206.222 kb on + strand at 4206.222 kb on + strand at 4206.223 kb on - strand at 4206.280 kb on - strand at 4206.507 kb on + strand at 4206.641 kb on + strand, within pbpC at 4206.849 kb on + strand, within pbpC at 4206.941 kb on + strand, within pbpC at 4207.104 kb on - strand, within pbpC at 4207.104 kb on - strand, within pbpC at 4207.205 kb on + strand, within pbpC at 4207.477 kb on + strand, within pbpC at 4207.477 kb on + strand, within pbpC at 4207.503 kb on + strand, within pbpC at 4207.503 kb on + strand, within pbpC at 4207.503 kb on + strand, within pbpC at 4207.553 kb on - strand, within pbpC at 4207.622 kb on + strand, within pbpC at 4207.623 kb on - strand, within pbpC at 4207.635 kb on + strand, within pbpC at 4207.635 kb on + strand, within pbpC at 4207.636 kb on - strand, within pbpC at 4207.636 kb on - strand, within pbpC at 4207.636 kb on - strand, within pbpC at 4207.869 kb on + strand, within pbpC at 4207.967 kb on + strand, within pbpC at 4208.131 kb on + strand, within pbpC at 4208.131 kb on + strand, within pbpC at 4208.156 kb on + strand, within pbpC at 4208.854 kb on - strand at 4208.901 kb on + strand at 4208.958 kb on + strand at 4208.979 kb on + strand at 4209.049 kb on - strand, within bisC at 4209.238 kb on + strand, within bisC at 4209.238 kb on + strand, within bisC at 4209.239 kb on - strand, within bisC at 4209.334 kb on + strand, within bisC at 4209.377 kb on - strand, within bisC at 4209.470 kb on + strand, within bisC at 4209.490 kb on + strand, within bisC at 4209.557 kb on + strand, within bisC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,205,436 - yfhM OKFHMN_21675 0.83 -0.0 4,205,648 + yfhM OKFHMN_21675 0.87 -0.1 4,205,868 - -0.5 4,205,894 + +1.0 4,205,927 - -1.9 4,206,055 + -0.7 4,206,055 + -0.1 4,206,083 + +0.6 4,206,083 + +0.7 4,206,159 + -0.8 4,206,160 - -1.0 4,206,189 + +0.2 4,206,222 + +0.8 4,206,222 + +0.7 4,206,222 + -0.6 4,206,223 - +1.0 4,206,280 - +0.5 4,206,507 + -2.2 4,206,641 + pbpC OKFHMN_21680 0.16 +0.1 4,206,849 + pbpC OKFHMN_21680 0.25 -0.1 4,206,941 + pbpC OKFHMN_21680 0.28 +1.3 4,207,104 - pbpC OKFHMN_21680 0.36 +0.9 4,207,104 - pbpC OKFHMN_21680 0.36 -0.3 4,207,205 + pbpC OKFHMN_21680 0.40 -0.8 4,207,477 + pbpC OKFHMN_21680 0.52 +0.1 4,207,477 + pbpC OKFHMN_21680 0.52 +0.4 4,207,503 + pbpC OKFHMN_21680 0.53 +0.1 4,207,503 + pbpC OKFHMN_21680 0.53 +1.3 4,207,503 + pbpC OKFHMN_21680 0.53 -0.7 4,207,553 - pbpC OKFHMN_21680 0.55 +1.1 4,207,622 + pbpC OKFHMN_21680 0.58 -0.5 4,207,623 - pbpC OKFHMN_21680 0.58 -0.2 4,207,635 + pbpC OKFHMN_21680 0.58 -0.2 4,207,635 + pbpC OKFHMN_21680 0.58 +0.0 4,207,636 - pbpC OKFHMN_21680 0.59 +0.0 4,207,636 - pbpC OKFHMN_21680 0.59 +0.5 4,207,636 - pbpC OKFHMN_21680 0.59 +0.1 4,207,869 + pbpC OKFHMN_21680 0.69 -0.3 4,207,967 + pbpC OKFHMN_21680 0.73 +0.5 4,208,131 + pbpC OKFHMN_21680 0.80 +0.4 4,208,131 + pbpC OKFHMN_21680 0.80 +1.1 4,208,156 + pbpC OKFHMN_21680 0.81 -1.0 4,208,854 - +0.2 4,208,901 + -0.8 4,208,958 + +0.9 4,208,979 + -0.3 4,209,049 - bisC OKFHMN_21685 0.12 -0.8 4,209,238 + bisC OKFHMN_21685 0.20 +0.3 4,209,238 + bisC OKFHMN_21685 0.20 +0.1 4,209,239 - bisC OKFHMN_21685 0.20 -0.0 4,209,334 + bisC OKFHMN_21685 0.24 +0.6 4,209,377 - bisC OKFHMN_21685 0.26 -1.7 4,209,470 + bisC OKFHMN_21685 0.30 -0.2 4,209,490 + bisC OKFHMN_21685 0.31 +0.4 4,209,557 + bisC OKFHMN_21685 0.34 +0.4
Or see this region's nucleotide sequence