Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mltF and purL are separated by 256 nucleotides purL and qseE are separated by 620 nucleotides
OKFHMN_21465: mltF - membrane-bound lytic murein transglycosylase MltF, at 4,156,839 to 4,158,395
mltF
OKFHMN_21470: purL - phosphoribosylformylglycinamidine synthase, at 4,158,652 to 4,162,539
purL
OKFHMN_21485: qseE - two component system sensor histidine kinase QseE/GlrK, at 4,163,160 to 4,164,542
qseE
Position (kb) 4158
4159
4160
4161
4162
4163 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4157.691 kb on + strand, within mltF at 4157.692 kb on - strand, within mltF at 4157.692 kb on - strand, within mltF at 4157.692 kb on - strand, within mltF at 4157.871 kb on + strand, within mltF at 4157.872 kb on - strand, within mltF at 4157.970 kb on - strand, within mltF at 4158.022 kb on + strand, within mltF at 4158.022 kb on + strand, within mltF at 4158.022 kb on + strand, within mltF at 4158.023 kb on - strand, within mltF at 4158.027 kb on - strand, within mltF at 4158.062 kb on + strand, within mltF at 4158.229 kb on + strand, within mltF at 4158.229 kb on + strand, within mltF at 4158.242 kb on + strand at 4158.374 kb on - strand at 4158.443 kb on + strand at 4158.507 kb on + strand at 4158.508 kb on - strand at 4158.508 kb on - strand at 4158.554 kb on + strand at 4158.596 kb on + strand at 4158.596 kb on + strand at 4158.597 kb on - strand at 4158.651 kb on + strand at 4158.939 kb on + strand at 4158.939 kb on + strand at 4158.939 kb on + strand at 4158.950 kb on + strand at 4158.985 kb on + strand at 4158.986 kb on - strand at 4158.986 kb on - strand at 4158.988 kb on + strand at 4158.988 kb on + strand at 4158.988 kb on + strand at 4158.988 kb on + strand at 4158.988 kb on + strand at 4158.989 kb on - strand at 4158.989 kb on - strand at 4158.989 kb on - strand at 4158.990 kb on + strand at 4158.990 kb on + strand at 4158.990 kb on + strand at 4158.991 kb on - strand at 4158.991 kb on - strand at 4158.992 kb on + strand at 4158.993 kb on - strand at 4159.079 kb on + strand, within purL at 4159.080 kb on - strand, within purL at 4159.270 kb on + strand, within purL at 4159.271 kb on - strand, within purL at 4159.272 kb on + strand, within purL at 4159.273 kb on - strand, within purL at 4159.273 kb on - strand, within purL at 4159.273 kb on - strand, within purL at 4159.418 kb on - strand, within purL at 4159.419 kb on + strand, within purL at 4159.419 kb on + strand, within purL at 4159.419 kb on + strand, within purL at 4159.463 kb on - strand, within purL at 4159.516 kb on - strand, within purL at 4159.813 kb on + strand, within purL at 4159.826 kb on - strand, within purL at 4160.060 kb on + strand, within purL at 4160.330 kb on + strand, within purL at 4160.331 kb on - strand, within purL at 4160.352 kb on + strand, within purL at 4160.498 kb on + strand, within purL at 4160.498 kb on + strand, within purL at 4160.499 kb on - strand, within purL at 4160.723 kb on - strand, within purL at 4160.912 kb on - strand, within purL at 4160.912 kb on - strand, within purL at 4160.985 kb on + strand, within purL at 4160.985 kb on + strand, within purL at 4160.986 kb on - strand, within purL at 4160.986 kb on - strand, within purL at 4161.083 kb on + strand, within purL at 4161.084 kb on - strand, within purL at 4161.084 kb on - strand, within purL at 4161.084 kb on - strand, within purL at 4161.121 kb on - strand, within purL at 4161.221 kb on + strand, within purL at 4161.222 kb on - strand, within purL at 4161.250 kb on + strand, within purL at 4161.282 kb on + strand, within purL at 4161.282 kb on + strand, within purL at 4161.283 kb on - strand, within purL at 4161.326 kb on + strand, within purL at 4161.511 kb on + strand, within purL at 4161.511 kb on + strand, within purL at 4161.569 kb on + strand, within purL at 4161.748 kb on + strand, within purL at 4161.749 kb on - strand, within purL at 4161.749 kb on - strand, within purL at 4161.751 kb on - strand, within purL at 4161.864 kb on + strand, within purL at 4162.056 kb on + strand, within purL at 4162.056 kb on + strand, within purL at 4162.078 kb on - strand, within purL at 4162.316 kb on - strand at 4162.316 kb on - strand at 4162.420 kb on - strand at 4162.524 kb on + strand at 4162.524 kb on + strand at 4162.525 kb on - strand at 4162.597 kb on + strand at 4162.601 kb on + strand at 4162.601 kb on + strand at 4162.613 kb on + strand at 4162.615 kb on + strand at 4162.616 kb on - strand at 4162.616 kb on - strand at 4162.616 kb on - strand at 4162.616 kb on - strand at 4162.696 kb on + strand at 4162.735 kb on - strand at 4162.869 kb on - strand at 4162.892 kb on + strand at 4162.892 kb on + strand at 4162.892 kb on + strand at 4162.892 kb on + strand at 4162.916 kb on + strand at 4162.916 kb on + strand at 4162.917 kb on - strand at 4162.917 kb on - strand at 4162.917 kb on - strand at 4162.975 kb on + strand at 4162.975 kb on + strand at 4162.975 kb on + strand at 4162.979 kb on + strand at 4162.979 kb on + strand at 4162.980 kb on - strand at 4162.980 kb on - strand at 4162.980 kb on - strand at 4162.981 kb on + strand at 4163.041 kb on - strand at 4163.078 kb on + strand at 4163.089 kb on + strand at 4163.108 kb on + strand at 4163.109 kb on - strand at 4163.158 kb on + strand at 4163.338 kb on - strand, within qseE at 4163.426 kb on - strand, within qseE
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,157,691 + mltF OKFHMN_21465 0.55 +0.6 4,157,692 - mltF OKFHMN_21465 0.55 -0.0 4,157,692 - mltF OKFHMN_21465 0.55 +1.3 4,157,692 - mltF OKFHMN_21465 0.55 -0.1 4,157,871 + mltF OKFHMN_21465 0.66 +0.4 4,157,872 - mltF OKFHMN_21465 0.66 -0.6 4,157,970 - mltF OKFHMN_21465 0.73 -1.7 4,158,022 + mltF OKFHMN_21465 0.76 +0.3 4,158,022 + mltF OKFHMN_21465 0.76 +0.3 4,158,022 + mltF OKFHMN_21465 0.76 +0.5 4,158,023 - mltF OKFHMN_21465 0.76 +0.2 4,158,027 - mltF OKFHMN_21465 0.76 +1.4 4,158,062 + mltF OKFHMN_21465 0.79 +0.2 4,158,229 + mltF OKFHMN_21465 0.89 +1.7 4,158,229 + mltF OKFHMN_21465 0.89 -0.8 4,158,242 + +0.6 4,158,374 - +0.3 4,158,443 + +0.8 4,158,507 + -0.7 4,158,508 - +0.1 4,158,508 - +0.7 4,158,554 + +0.5 4,158,596 + -1.5 4,158,596 + +1.1 4,158,597 - -1.4 4,158,651 + -0.9 4,158,939 + -3.4 4,158,939 + -3.0 4,158,939 + -5.1 4,158,950 + -2.4 4,158,985 + -6.3 4,158,986 - -5.0 4,158,986 - -5.4 4,158,988 + -4.1 4,158,988 + -4.1 4,158,988 + -5.3 4,158,988 + -4.9 4,158,988 + -3.7 4,158,989 - -3.4 4,158,989 - -1.9 4,158,989 - -4.7 4,158,990 + -3.9 4,158,990 + -2.8 4,158,990 + -4.4 4,158,991 - -4.9 4,158,991 - -5.1 4,158,992 + -2.8 4,158,993 - -3.4 4,159,079 + purL OKFHMN_21470 0.11 -4.5 4,159,080 - purL OKFHMN_21470 0.11 -3.2 4,159,270 + purL OKFHMN_21470 0.16 -2.6 4,159,271 - purL OKFHMN_21470 0.16 -0.5 4,159,272 + purL OKFHMN_21470 0.16 -5.8 4,159,273 - purL OKFHMN_21470 0.16 -3.3 4,159,273 - purL OKFHMN_21470 0.16 -2.8 4,159,273 - purL OKFHMN_21470 0.16 -2.7 4,159,418 - purL OKFHMN_21470 0.20 -5.1 4,159,419 + purL OKFHMN_21470 0.20 -3.9 4,159,419 + purL OKFHMN_21470 0.20 -5.1 4,159,419 + purL OKFHMN_21470 0.20 -0.6 4,159,463 - purL OKFHMN_21470 0.21 -4.2 4,159,516 - purL OKFHMN_21470 0.22 -4.1 4,159,813 + purL OKFHMN_21470 0.30 -4.6 4,159,826 - purL OKFHMN_21470 0.30 -4.8 4,160,060 + purL OKFHMN_21470 0.36 -4.2 4,160,330 + purL OKFHMN_21470 0.43 -2.5 4,160,331 - purL OKFHMN_21470 0.43 -5.2 4,160,352 + purL OKFHMN_21470 0.44 -4.4 4,160,498 + purL OKFHMN_21470 0.47 -1.8 4,160,498 + purL OKFHMN_21470 0.47 -2.8 4,160,499 - purL OKFHMN_21470 0.48 -2.9 4,160,723 - purL OKFHMN_21470 0.53 -3.4 4,160,912 - purL OKFHMN_21470 0.58 -3.1 4,160,912 - purL OKFHMN_21470 0.58 -6.2 4,160,985 + purL OKFHMN_21470 0.60 -1.9 4,160,985 + purL OKFHMN_21470 0.60 -4.5 4,160,986 - purL OKFHMN_21470 0.60 -3.3 4,160,986 - purL OKFHMN_21470 0.60 -3.7 4,161,083 + purL OKFHMN_21470 0.63 -0.2 4,161,084 - purL OKFHMN_21470 0.63 -2.2 4,161,084 - purL OKFHMN_21470 0.63 -4.8 4,161,084 - purL OKFHMN_21470 0.63 -0.0 4,161,121 - purL OKFHMN_21470 0.64 -5.8 4,161,221 + purL OKFHMN_21470 0.66 -3.2 4,161,222 - purL OKFHMN_21470 0.66 -2.5 4,161,250 + purL OKFHMN_21470 0.67 -3.5 4,161,282 + purL OKFHMN_21470 0.68 -4.3 4,161,282 + purL OKFHMN_21470 0.68 -4.9 4,161,283 - purL OKFHMN_21470 0.68 -3.7 4,161,326 + purL OKFHMN_21470 0.69 -4.8 4,161,511 + purL OKFHMN_21470 0.74 -5.0 4,161,511 + purL OKFHMN_21470 0.74 -4.5 4,161,569 + purL OKFHMN_21470 0.75 -3.3 4,161,748 + purL OKFHMN_21470 0.80 -5.3 4,161,749 - purL OKFHMN_21470 0.80 -3.9 4,161,749 - purL OKFHMN_21470 0.80 -2.0 4,161,751 - purL OKFHMN_21470 0.80 -3.7 4,161,864 + purL OKFHMN_21470 0.83 -4.4 4,162,056 + purL OKFHMN_21470 0.88 -5.1 4,162,056 + purL OKFHMN_21470 0.88 -3.1 4,162,078 - purL OKFHMN_21470 0.88 -4.2 4,162,316 - -2.8 4,162,316 - -2.9 4,162,420 - -3.2 4,162,524 + +0.1 4,162,524 + +0.2 4,162,525 - -0.4 4,162,597 + +0.6 4,162,601 + +0.6 4,162,601 + -1.0 4,162,613 + +0.2 4,162,615 + -0.1 4,162,616 - +0.7 4,162,616 - +0.3 4,162,616 - -0.6 4,162,616 - -0.1 4,162,696 + +0.9 4,162,735 - +0.8 4,162,869 - -0.4 4,162,892 + +1.2 4,162,892 + +0.7 4,162,892 + +1.0 4,162,892 + +0.4 4,162,916 + +0.6 4,162,916 + +0.6 4,162,917 - -1.9 4,162,917 - +0.1 4,162,917 - -0.3 4,162,975 + -0.2 4,162,975 + +0.5 4,162,975 + +1.8 4,162,979 + +0.4 4,162,979 + -0.2 4,162,980 - +0.8 4,162,980 - -0.6 4,162,980 - +0.4 4,162,981 + -0.2 4,163,041 - -0.7 4,163,078 + +0.1 4,163,089 + -0.2 4,163,108 + -0.2 4,163,109 - +0.2 4,163,158 + +0.6 4,163,338 - qseE OKFHMN_21485 0.13 +0.2 4,163,426 - qseE OKFHMN_21485 0.19 +1.1
Or see this region's nucleotide sequence