Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21305

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkgtP and yfiM overlap by 4 nucleotidesyfiM and pssA are separated by 96 nucleotides OKFHMN_21300: kgtP - alpha-ketoglutarate permease, at 4,128,636 to 4,129,934 kgtP OKFHMN_21305: yfiM - YfiM family lipoprotein, at 4,129,931 to 4,130,203 yfiM OKFHMN_21310: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,130,300 to 4,131,655 pssA Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -2 -1 0 1 2at 4128.939 kb on - strand, within kgtPat 4128.939 kb on - strand, within kgtPat 4129.079 kb on + strand, within kgtPat 4129.080 kb on - strand, within kgtPat 4129.080 kb on - strand, within kgtPat 4129.431 kb on - strand, within kgtPat 4129.440 kb on + strand, within kgtPat 4129.441 kb on - strand, within kgtPat 4129.517 kb on + strand, within kgtPat 4129.573 kb on + strand, within kgtPat 4129.767 kb on + strand, within kgtPat 4129.768 kb on - strand, within kgtPat 4129.768 kb on - strand, within kgtPat 4129.784 kb on + strand, within kgtPat 4129.784 kb on + strand, within kgtPat 4129.787 kb on - strand, within kgtPat 4129.810 kb on + strandat 4129.810 kb on + strandat 4129.810 kb on + strandat 4129.831 kb on + strandat 4129.857 kb on + strandat 4129.858 kb on - strandat 4130.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,128,939 - kgtP OKFHMN_21300 0.23 +0.7
4,128,939 - kgtP OKFHMN_21300 0.23 -0.9
4,129,079 + kgtP OKFHMN_21300 0.34 +0.3
4,129,080 - kgtP OKFHMN_21300 0.34 -0.2
4,129,080 - kgtP OKFHMN_21300 0.34 -0.9
4,129,431 - kgtP OKFHMN_21300 0.61 -0.4
4,129,440 + kgtP OKFHMN_21300 0.62 -0.8
4,129,441 - kgtP OKFHMN_21300 0.62 +0.9
4,129,517 + kgtP OKFHMN_21300 0.68 +2.6
4,129,573 + kgtP OKFHMN_21300 0.72 +0.2
4,129,767 + kgtP OKFHMN_21300 0.87 -0.6
4,129,768 - kgtP OKFHMN_21300 0.87 -0.1
4,129,768 - kgtP OKFHMN_21300 0.87 -2.1
4,129,784 + kgtP OKFHMN_21300 0.88 -0.8
4,129,784 + kgtP OKFHMN_21300 0.88 -0.2
4,129,787 - kgtP OKFHMN_21300 0.89 +0.7
4,129,810 + +0.7
4,129,810 + +0.5
4,129,810 + +1.5
4,129,831 + -1.9
4,129,857 + +0.7
4,129,858 - +0.4
4,130,192 - +0.4

Or see this region's nucleotide sequence