Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21285

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nt16S_rrna and Glu_trna are separated by 85 nucleotidesGlu_trna and 23S_rrna are separated by 193 nucleotides23S_rrna and 5S_rrna are separated by 94 nucleotides5S_rrna and yfiS are separated by 80 nucleotidesyfiS and kgtP are separated by 179 nucleotides OKFHMN_21270: 16S_rrna - 16S ribosomal RNA, at 4,123,303 to 4,124,844 _rrna OKFHMN_21275: Glu_trna - tRNA-Glu(ttc), at 4,124,930 to 4,125,005 _trna OKFHMN_21285: 23S_rrna - 23S ribosomal RNA, at 4,125,199 to 4,128,103 _rrna OKFHMN_21290: 5S_rrna - 5S ribosomal RNA, at 4,128,198 to 4,128,313 _rrna OKFHMN_21295: yfiS - Protein YfiS, at 4,128,394 to 4,128,456 yfiS OKFHMN_21300: kgtP - alpha-ketoglutarate permease, at 4,128,636 to 4,129,934 kgtP Position (kb) 4125 4126 4127 4128 4129Strain fitness (log2 ratio) -1 0 1at 4128.396 kb on - strandat 4128.398 kb on - strandat 4128.499 kb on - strandat 4128.629 kb on + strandat 4128.726 kb on - strandat 4128.893 kb on - strand, within kgtPat 4128.939 kb on - strand, within kgtPat 4128.939 kb on - strand, within kgtPat 4129.079 kb on + strand, within kgtPat 4129.080 kb on - strand, within kgtPat 4129.080 kb on - strand, within kgtP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
4,128,396 - -0.4
4,128,398 - +1.0
4,128,499 - +0.4
4,128,629 + +1.1
4,128,726 - +1.7
4,128,893 - kgtP OKFHMN_21300 0.20 +0.6
4,128,939 - kgtP OKFHMN_21300 0.23 +0.7
4,128,939 - kgtP OKFHMN_21300 0.23 -0.9
4,129,079 + kgtP OKFHMN_21300 0.34 +0.3
4,129,080 - kgtP OKFHMN_21300 0.34 -0.2
4,129,080 - kgtP OKFHMN_21300 0.34 -0.9

Or see this region's nucleotide sequence