Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20375

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,965,317	-	cysJ	OKFHMN_20370	0.52	-2.3
3,965,353	+	cysJ	OKFHMN_20370	0.54	-2.1
3,965,354	-	cysJ	OKFHMN_20370	0.55	-2.9
3,965,432	+	cysJ	OKFHMN_20370	0.59	-2.6
3,965,504	-	cysJ	OKFHMN_20370	0.63	-5.0
3,965,695	+	cysJ	OKFHMN_20370	0.73	-3.4
3,965,696	-	cysJ	OKFHMN_20370	0.73	-3.8
3,965,740	+	cysJ	OKFHMN_20370	0.76	-2.9
3,965,741	-	cysJ	OKFHMN_20370	0.76	-1.9
3,965,885	+	cysJ	OKFHMN_20370	0.84	-0.7
3,965,886	-	cysJ	OKFHMN_20370	0.84	-3.9
3,965,955	+	cysJ	OKFHMN_20370	0.88	-1.2
3,965,955	+	cysJ	OKFHMN_20370	0.88	-4.4
3,966,020	+				-2.5
3,966,167	+				-2.7
3,966,250	+				-2.6
3,966,250	+				-2.4
3,966,251	-				-2.6
3,966,343	+				-5.9
3,966,343	+				-2.7
3,966,344	-	cysI	OKFHMN_20375	0.10	-4.3
3,966,441	+	cysI	OKFHMN_20375	0.16	-2.5
3,966,442	-	cysI	OKFHMN_20375	0.16	-3.5
3,966,442	-	cysI	OKFHMN_20375	0.16	-2.2
3,966,496	+	cysI	OKFHMN_20375	0.19	-3.3
3,966,496	+	cysI	OKFHMN_20375	0.19	-2.8
3,966,497	-	cysI	OKFHMN_20375	0.19	-2.3
3,966,497	-	cysI	OKFHMN_20375	0.19	-3.2
3,966,497	-	cysI	OKFHMN_20375	0.19	-2.9
3,966,497	-	cysI	OKFHMN_20375	0.19	-2.5
3,966,635	+	cysI	OKFHMN_20375	0.27	-3.2
3,966,635	+	cysI	OKFHMN_20375	0.27	-3.7
3,966,803	-	cysI	OKFHMN_20375	0.37	-3.7
3,966,997	+	cysI	OKFHMN_20375	0.48	-2.6
3,966,997	+	cysI	OKFHMN_20375	0.48	-2.8
3,967,096	+	cysI	OKFHMN_20375	0.54	-3.8
3,967,097	-	cysI	OKFHMN_20375	0.54	-1.1
3,967,128	+	cysI	OKFHMN_20375	0.56	-1.7
3,967,207	-	cysI	OKFHMN_20375	0.60	-3.6
3,967,234	-	cysI	OKFHMN_20375	0.62	-3.3
3,967,584	+	cysI	OKFHMN_20375	0.82	-3.0
3,967,723	+				-4.0
3,967,724	-				-3.2
3,967,958	-				-3.6
3,968,029	+				-2.4
3,968,100	-	cysH	OKFHMN_20380	0.19	-4.3
3,968,236	-	cysH	OKFHMN_20380	0.38	-1.3
3,968,268	-	cysH	OKFHMN_20380	0.42	-2.0
3,968,349	-	cysH	OKFHMN_20380	0.53	+1.1
3,968,526	+	cysH	OKFHMN_20380	0.77	-0.9
3,968,528	+	cysH	OKFHMN_20380	0.78	-3.1
3,968,558	+	cysH	OKFHMN_20380	0.82	-4.2
3,968,605	+	cysH	OKFHMN_20380	0.88	-1.5
3,968,803	+				-0.9
3,968,804	-				+0.7
3,968,804	-				-0.4
3,968,880	+				+0.3