Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19940

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,873,066	+	araE	OKFHMN_19930	0.89	-1.3
3,873,067	-	araE	OKFHMN_19930	0.89	+0.3
3,873,097	+				+0.9
3,873,097	+				-0.3
3,873,097	+				+0.5
3,873,098	-				+0.2
3,873,213	+				-1.6
3,873,247	+				-0.4
3,873,247	+				+0.0
3,873,314	+				-0.3
3,873,315	-				-0.4
3,873,472	+	ygeA	OKFHMN_19935	0.17	+0.5
3,873,472	+	ygeA	OKFHMN_19935	0.17	-1.3
3,873,477	-	ygeA	OKFHMN_19935	0.18	+0.5
3,873,477	-	ygeA	OKFHMN_19935	0.18	+0.1
3,873,566	-	ygeA	OKFHMN_19935	0.31	+0.1
3,873,588	-	ygeA	OKFHMN_19935	0.34	-0.1
3,873,606	-	ygeA	OKFHMN_19935	0.36	+0.2
3,873,614	+	ygeA	OKFHMN_19935	0.38	+0.3
3,873,614	+	ygeA	OKFHMN_19935	0.38	-0.1
3,873,833	+	ygeA	OKFHMN_19935	0.69	-2.2
3,873,882	+	ygeA	OKFHMN_19935	0.76	-0.2
3,873,886	-	ygeA	OKFHMN_19935	0.77	+1.7
3,873,958	+	ygeA	OKFHMN_19935	0.87	-0.1
3,874,059	+				-3.3
3,874,100	-				-2.7
3,874,268	-	lysR	OKFHMN_19940	0.25	-0.9
3,874,340	-	lysR	OKFHMN_19940	0.33	-3.6
3,874,388	+	lysR	OKFHMN_19940	0.38	-1.6
3,874,389	-	lysR	OKFHMN_19940	0.38	-2.6
3,874,389	-	lysR	OKFHMN_19940	0.38	-3.1
3,874,454	-	lysR	OKFHMN_19940	0.45	-3.3
3,874,472	-	lysR	OKFHMN_19940	0.47	-2.3
3,874,480	+	lysR	OKFHMN_19940	0.48	-4.1
3,874,509	+	lysR	OKFHMN_19940	0.51	-1.8
3,874,509	+	lysR	OKFHMN_19940	0.51	-2.9
3,874,567	+	lysR	OKFHMN_19940	0.57	-4.5
3,874,616	-	lysR	OKFHMN_19940	0.62	-0.3
3,874,616	-	lysR	OKFHMN_19940	0.62	-2.9
3,874,677	+	lysR	OKFHMN_19940	0.69	-2.3
3,874,788	+	lysR	OKFHMN_19940	0.81	-2.7
3,874,795	+	lysR	OKFHMN_19940	0.81	-0.2
3,874,795	+	lysR	OKFHMN_19940	0.81	-2.8
3,874,795	+	lysR	OKFHMN_19940	0.81	-1.2
3,874,796	-	lysR	OKFHMN_19940	0.82	-2.3
3,874,951	+				-1.0
3,874,951	+				-3.2
3,874,951	+				+1.1
3,874,952	-				-4.4
3,875,022	-				-2.8
3,875,057	+				-1.9
3,875,058	-				-2.9
3,875,180	+				-5.0
3,875,180	+				-4.2
3,875,281	-	lysA	OKFHMN_19945	0.15	-3.9
3,875,398	+	lysA	OKFHMN_19945	0.24	-3.0
3,875,464	+	lysA	OKFHMN_19945	0.30	-6.2
3,875,464	+	lysA	OKFHMN_19945	0.30	-4.6
3,875,465	-	lysA	OKFHMN_19945	0.30	-2.9
3,875,558	-	lysA	OKFHMN_19945	0.37	+0.9
3,875,592	-	lysA	OKFHMN_19945	0.40	-1.7
3,875,622	+	lysA	OKFHMN_19945	0.42	-3.3
3,875,622	+	lysA	OKFHMN_19945	0.42	-3.0
3,875,623	-	lysA	OKFHMN_19945	0.42	+0.2
3,875,710	+	lysA	OKFHMN_19945	0.49	-4.0
3,875,711	-	lysA	OKFHMN_19945	0.49	-3.2
3,875,711	-	lysA	OKFHMN_19945	0.49	-2.9
3,875,752	+	lysA	OKFHMN_19945	0.52	-3.0
3,875,819	+	lysA	OKFHMN_19945	0.58	+1.2
3,875,928	+	lysA	OKFHMN_19945	0.66	-3.0