Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19740

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_19730 and OKFHMN_19735 are separated by 66 nucleotidesOKFHMN_19735 and araC are separated by 345 nucleotidesaraC and sctC overlap by 4 nucleotides OKFHMN_19730: OKFHMN_19730 - glycoside hydrolase family 15 protein, at 3,839,858 to 3,840,916 _19730 OKFHMN_19735: OKFHMN_19735 - GhoT/OrtT family toxin, at 3,840,983 to 3,841,162 _19735 OKFHMN_19740: araC - AraC family transcriptional regulator, at 3,841,508 to 3,842,257 araC OKFHMN_19745: sctC - type III secretion system outer membrane ring subunit SctC, at 3,842,254 to 3,843,957 sctC Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -1 0 1at 3840.648 kb on - strand, within OKFHMN_19730at 3840.717 kb on + strand, within OKFHMN_19730at 3840.785 kb on - strand, within OKFHMN_19730at 3841.134 kb on + strand, within OKFHMN_19735at 3841.312 kb on - strandat 3841.379 kb on + strandat 3841.677 kb on + strand, within araCat 3841.708 kb on - strand, within araCat 3841.762 kb on - strand, within araCat 3841.958 kb on - strand, within araCat 3842.405 kb on - strandat 3842.427 kb on + strand, within sctCat 3842.428 kb on - strand, within sctCat 3842.482 kb on + strand, within sctCat 3842.521 kb on - strand, within sctCat 3842.856 kb on + strand, within sctCat 3843.148 kb on - strand, within sctCat 3843.194 kb on + strand, within sctCat 3843.199 kb on - strand, within sctC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,840,648 - OKFHMN_19730 0.75 -1.4
3,840,717 + OKFHMN_19730 0.81 +0.4
3,840,785 - OKFHMN_19730 0.88 -0.3
3,841,134 + OKFHMN_19735 0.84 -0.5
3,841,312 - -1.5
3,841,379 + -0.6
3,841,677 + araC OKFHMN_19740 0.23 +0.4
3,841,708 - araC OKFHMN_19740 0.27 +0.1
3,841,762 - araC OKFHMN_19740 0.34 +0.9
3,841,958 - araC OKFHMN_19740 0.60 -0.1
3,842,405 - +0.2
3,842,427 + sctC OKFHMN_19745 0.10 +0.2
3,842,428 - sctC OKFHMN_19745 0.10 +0.1
3,842,482 + sctC OKFHMN_19745 0.13 +0.7
3,842,521 - sctC OKFHMN_19745 0.16 -0.0
3,842,856 + sctC OKFHMN_19745 0.35 -0.6
3,843,148 - sctC OKFHMN_19745 0.52 +0.7
3,843,194 + sctC OKFHMN_19745 0.55 -0.3
3,843,199 - sctC OKFHMN_19745 0.55 -0.3

Or see this region's nucleotide sequence