Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xylA and xylB are separated by 71 nucleotides xylB and yiaA are separated by 168 nucleotides yiaA and yiaA are separated by 45 nucleotides
OKFHMN_15955: xylA - xylose isomerase, at 3,098,138 to 3,099,460
xylA
OKFHMN_15960: xylB - xylulokinase, at 3,099,532 to 3,100,986
xylB
OKFHMN_15965: yiaA - Inner membrane protein YiaB, at 3,101,155 to 3,101,496
yiaA
OKFHMN_15970: yiaA - YiaB family inner membrane protein, at 3,101,542 to 3,101,979
yiaA
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3098.563 kb on + strand, within xylA at 3098.650 kb on + strand, within xylA at 3098.650 kb on + strand, within xylA at 3098.650 kb on + strand, within xylA at 3098.690 kb on + strand, within xylA at 3098.691 kb on - strand, within xylA at 3098.773 kb on + strand, within xylA at 3098.774 kb on - strand, within xylA at 3098.795 kb on - strand, within xylA at 3098.864 kb on + strand, within xylA at 3098.864 kb on + strand, within xylA at 3098.865 kb on - strand, within xylA at 3098.865 kb on - strand, within xylA at 3098.888 kb on + strand, within xylA at 3098.889 kb on - strand, within xylA at 3098.889 kb on - strand, within xylA at 3099.104 kb on + strand, within xylA at 3099.105 kb on - strand, within xylA at 3099.162 kb on + strand, within xylA at 3099.162 kb on + strand, within xylA at 3099.163 kb on - strand, within xylA at 3099.163 kb on - strand, within xylA at 3099.175 kb on + strand, within xylA at 3099.182 kb on - strand, within xylA at 3099.182 kb on - strand, within xylA at 3099.185 kb on + strand, within xylA at 3099.185 kb on + strand, within xylA at 3099.185 kb on + strand, within xylA at 3099.185 kb on + strand, within xylA at 3099.186 kb on - strand, within xylA at 3099.368 kb on + strand at 3099.382 kb on + strand at 3099.383 kb on - strand at 3099.459 kb on - strand at 3099.531 kb on + strand at 3099.531 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.535 kb on + strand at 3099.536 kb on - strand at 3099.536 kb on - strand at 3099.536 kb on - strand at 3099.536 kb on - strand at 3099.536 kb on - strand at 3099.776 kb on + strand, within xylB at 3099.776 kb on + strand, within xylB at 3099.777 kb on - strand, within xylB at 3099.912 kb on + strand, within xylB at 3099.921 kb on + strand, within xylB at 3099.922 kb on - strand, within xylB at 3099.977 kb on + strand, within xylB at 3099.977 kb on + strand, within xylB at 3099.978 kb on - strand, within xylB at 3100.009 kb on - strand, within xylB at 3100.033 kb on - strand, within xylB at 3100.033 kb on - strand, within xylB at 3100.112 kb on + strand, within xylB at 3100.112 kb on + strand, within xylB at 3100.113 kb on - strand, within xylB at 3100.136 kb on + strand, within xylB at 3100.138 kb on + strand, within xylB at 3100.138 kb on + strand, within xylB at 3100.155 kb on + strand, within xylB at 3100.155 kb on + strand, within xylB at 3100.170 kb on - strand, within xylB at 3100.283 kb on + strand, within xylB at 3100.307 kb on - strand, within xylB at 3100.331 kb on + strand, within xylB at 3100.332 kb on - strand, within xylB at 3100.391 kb on + strand, within xylB at 3100.392 kb on - strand, within xylB at 3100.542 kb on + strand, within xylB at 3100.543 kb on - strand, within xylB at 3100.543 kb on - strand, within xylB at 3100.543 kb on - strand, within xylB at 3100.554 kb on + strand, within xylB at 3100.555 kb on - strand, within xylB at 3100.555 kb on - strand, within xylB at 3100.642 kb on + strand, within xylB at 3100.643 kb on - strand, within xylB at 3100.687 kb on - strand, within xylB at 3100.732 kb on + strand, within xylB at 3100.732 kb on + strand, within xylB at 3100.732 kb on + strand, within xylB at 3100.877 kb on + strand at 3100.899 kb on - strand at 3100.915 kb on + strand at 3100.915 kb on + strand at 3100.958 kb on - strand at 3101.029 kb on - strand at 3101.029 kb on - strand at 3101.030 kb on + strand at 3101.030 kb on + strand at 3101.031 kb on - strand at 3101.032 kb on + strand at 3101.033 kb on - strand at 3101.059 kb on - strand at 3101.130 kb on - strand at 3101.139 kb on - strand at 3101.183 kb on + strand at 3101.296 kb on + strand, within yiaA at 3101.296 kb on + strand, within yiaA at 3101.297 kb on - strand, within yiaA at 3101.361 kb on - strand, within yiaA at 3101.413 kb on - strand, within yiaA at 3101.503 kb on + strand at 3101.504 kb on - strand at 3101.504 kb on - strand at 3101.504 kb on - strand at 3101.504 kb on - strand at 3101.504 kb on - strand at 3101.513 kb on - strand at 3101.563 kb on + strand at 3101.564 kb on - strand at 3101.577 kb on + strand at 3101.578 kb on - strand at 3101.594 kb on + strand, within yiaA at 3101.620 kb on + strand, within yiaA at 3101.620 kb on + strand, within yiaA at 3101.620 kb on + strand, within yiaA at 3101.620 kb on + strand, within yiaA at 3101.738 kb on - strand, within yiaA at 3101.738 kb on - strand, within yiaA at 3101.738 kb on - strand, within yiaA at 3101.765 kb on - strand, within yiaA at 3101.769 kb on + strand, within yiaA at 3101.816 kb on + strand, within yiaA at 3101.816 kb on + strand, within yiaA at 3101.817 kb on - strand, within yiaA at 3101.986 kb on + strand at 3101.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 3,098,563 + xylA OKFHMN_15955 0.32 +0.4 3,098,650 + xylA OKFHMN_15955 0.39 +1.3 3,098,650 + xylA OKFHMN_15955 0.39 +0.0 3,098,650 + xylA OKFHMN_15955 0.39 -0.5 3,098,690 + xylA OKFHMN_15955 0.42 -0.5 3,098,691 - xylA OKFHMN_15955 0.42 -0.4 3,098,773 + xylA OKFHMN_15955 0.48 +0.5 3,098,774 - xylA OKFHMN_15955 0.48 -0.4 3,098,795 - xylA OKFHMN_15955 0.50 +0.5 3,098,864 + xylA OKFHMN_15955 0.55 +0.7 3,098,864 + xylA OKFHMN_15955 0.55 -0.4 3,098,865 - xylA OKFHMN_15955 0.55 +0.6 3,098,865 - xylA OKFHMN_15955 0.55 -1.8 3,098,888 + xylA OKFHMN_15955 0.57 -0.2 3,098,889 - xylA OKFHMN_15955 0.57 -1.3 3,098,889 - xylA OKFHMN_15955 0.57 +1.8 3,099,104 + xylA OKFHMN_15955 0.73 +1.2 3,099,105 - xylA OKFHMN_15955 0.73 -1.7 3,099,162 + xylA OKFHMN_15955 0.77 -0.3 3,099,162 + xylA OKFHMN_15955 0.77 -0.8 3,099,163 - xylA OKFHMN_15955 0.77 +0.6 3,099,163 - xylA OKFHMN_15955 0.77 -0.1 3,099,175 + xylA OKFHMN_15955 0.78 +0.4 3,099,182 - xylA OKFHMN_15955 0.79 +0.0 3,099,182 - xylA OKFHMN_15955 0.79 -0.9 3,099,185 + xylA OKFHMN_15955 0.79 -0.6 3,099,185 + xylA OKFHMN_15955 0.79 +0.9 3,099,185 + xylA OKFHMN_15955 0.79 +1.3 3,099,185 + xylA OKFHMN_15955 0.79 -0.2 3,099,186 - xylA OKFHMN_15955 0.79 -0.2 3,099,368 + -1.0 3,099,382 + -0.3 3,099,383 - -1.6 3,099,459 - +0.7 3,099,531 + +0.2 3,099,531 + -0.2 3,099,535 + -0.0 3,099,535 + -0.9 3,099,535 + +0.2 3,099,535 + -0.3 3,099,535 + -0.1 3,099,535 + +0.3 3,099,535 + +0.3 3,099,536 - -0.1 3,099,536 - -1.7 3,099,536 - +0.3 3,099,536 - -0.3 3,099,536 - +2.0 3,099,776 + xylB OKFHMN_15960 0.17 +0.3 3,099,776 + xylB OKFHMN_15960 0.17 +1.0 3,099,777 - xylB OKFHMN_15960 0.17 +1.4 3,099,912 + xylB OKFHMN_15960 0.26 +0.2 3,099,921 + xylB OKFHMN_15960 0.27 -0.1 3,099,922 - xylB OKFHMN_15960 0.27 +0.4 3,099,977 + xylB OKFHMN_15960 0.31 -1.5 3,099,977 + xylB OKFHMN_15960 0.31 -0.3 3,099,978 - xylB OKFHMN_15960 0.31 -0.1 3,100,009 - xylB OKFHMN_15960 0.33 -0.0 3,100,033 - xylB OKFHMN_15960 0.34 +0.6 3,100,033 - xylB OKFHMN_15960 0.34 -0.3 3,100,112 + xylB OKFHMN_15960 0.40 +0.6 3,100,112 + xylB OKFHMN_15960 0.40 -0.3 3,100,113 - xylB OKFHMN_15960 0.40 -0.3 3,100,136 + xylB OKFHMN_15960 0.42 -1.6 3,100,138 + xylB OKFHMN_15960 0.42 +0.4 3,100,138 + xylB OKFHMN_15960 0.42 +0.4 3,100,155 + xylB OKFHMN_15960 0.43 -0.9 3,100,155 + xylB OKFHMN_15960 0.43 -0.4 3,100,170 - xylB OKFHMN_15960 0.44 -0.5 3,100,283 + xylB OKFHMN_15960 0.52 -0.5 3,100,307 - xylB OKFHMN_15960 0.53 -0.2 3,100,331 + xylB OKFHMN_15960 0.55 -0.1 3,100,332 - xylB OKFHMN_15960 0.55 +1.2 3,100,391 + xylB OKFHMN_15960 0.59 -0.1 3,100,392 - xylB OKFHMN_15960 0.59 -1.5 3,100,542 + xylB OKFHMN_15960 0.69 -0.0 3,100,543 - xylB OKFHMN_15960 0.69 -0.5 3,100,543 - xylB OKFHMN_15960 0.69 -0.6 3,100,543 - xylB OKFHMN_15960 0.69 +0.4 3,100,554 + xylB OKFHMN_15960 0.70 -1.8 3,100,555 - xylB OKFHMN_15960 0.70 -0.6 3,100,555 - xylB OKFHMN_15960 0.70 -0.0 3,100,642 + xylB OKFHMN_15960 0.76 -1.7 3,100,643 - xylB OKFHMN_15960 0.76 -0.1 3,100,687 - xylB OKFHMN_15960 0.79 -1.6 3,100,732 + xylB OKFHMN_15960 0.82 +0.2 3,100,732 + xylB OKFHMN_15960 0.82 -0.4 3,100,732 + xylB OKFHMN_15960 0.82 -0.7 3,100,877 + -0.4 3,100,899 - -0.3 3,100,915 + +0.1 3,100,915 + +0.3 3,100,958 - +0.5 3,101,029 - -0.3 3,101,029 - -0.5 3,101,030 + -0.5 3,101,030 + +0.8 3,101,031 - -0.3 3,101,032 + +0.8 3,101,033 - -0.2 3,101,059 - +0.0 3,101,130 - -0.4 3,101,139 - -0.8 3,101,183 + +0.2 3,101,296 + yiaA OKFHMN_15965 0.41 -0.1 3,101,296 + yiaA OKFHMN_15965 0.41 -0.2 3,101,297 - yiaA OKFHMN_15965 0.42 +0.4 3,101,361 - yiaA OKFHMN_15965 0.60 -0.0 3,101,413 - yiaA OKFHMN_15965 0.75 +0.4 3,101,503 + -0.1 3,101,504 - +0.2 3,101,504 - +0.1 3,101,504 - -0.6 3,101,504 - +0.7 3,101,504 - +0.7 3,101,513 - -0.1 3,101,563 + +0.6 3,101,564 - +0.0 3,101,577 + +0.1 3,101,578 - -0.5 3,101,594 + yiaA OKFHMN_15970 0.12 -0.6 3,101,620 + yiaA OKFHMN_15970 0.18 +0.2 3,101,620 + yiaA OKFHMN_15970 0.18 +0.4 3,101,620 + yiaA OKFHMN_15970 0.18 +0.6 3,101,620 + yiaA OKFHMN_15970 0.18 +0.7 3,101,738 - yiaA OKFHMN_15970 0.45 -0.7 3,101,738 - yiaA OKFHMN_15970 0.45 +0.2 3,101,738 - yiaA OKFHMN_15970 0.45 -0.5 3,101,765 - yiaA OKFHMN_15970 0.51 -0.0 3,101,769 + yiaA OKFHMN_15970 0.52 -1.3 3,101,816 + yiaA OKFHMN_15970 0.63 +0.1 3,101,816 + yiaA OKFHMN_15970 0.63 -1.4 3,101,817 - yiaA OKFHMN_15970 0.63 -0.7 3,101,986 + -0.6 3,101,986 + +0.4
Or see this region's nucleotide sequence