Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15290

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntescK and escL overlap by 14 nucleotidesescL and escR are separated by 4 nucleotidesescR and escS overlap by 1 nucleotidesescS and escT overlap by 1 nucleotides OKFHMN_15280: escK - type III secretion system sorting platform component, at 2,955,850 to 2,956,449 escK OKFHMN_15285: escL - negative regulator EscL, stator protein, at 2,956,436 to 2,957,089 escL OKFHMN_15290: escR - Type III secretion systemminor export apparatus protein EscR, at 2,957,094 to 2,957,747 escR OKFHMN_15295: escS - type III secretion system LEE export apparatus protein EscS, at 2,957,747 to 2,958,016 escS OKFHMN_15300: escT - type III secretion system LEE export apparatus protein EscT, at 2,958,016 to 2,958,792 escT Position (kb) 2957 2958Strain fitness (log2 ratio) -2 -1 0 1at 2956.867 kb on + strand, within escLat 2956.954 kb on + strand, within escLat 2957.846 kb on - strand, within escSat 2957.846 kb on - strand, within escSat 2957.985 kb on + strand, within escSat 2958.026 kb on + strandat 2958.293 kb on + strand, within escTat 2958.339 kb on - strand, within escTat 2958.363 kb on - strand, within escTat 2958.449 kb on + strand, within escTat 2958.660 kb on - strand, within escT

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,956,867 + escL OKFHMN_15285 0.66 +0.1
2,956,954 + escL OKFHMN_15285 0.79 -0.5
2,957,846 - escS OKFHMN_15295 0.37 -1.2
2,957,846 - escS OKFHMN_15295 0.37 +0.3
2,957,985 + escS OKFHMN_15295 0.88 -0.4
2,958,026 + -1.8
2,958,293 + escT OKFHMN_15300 0.36 -0.2
2,958,339 - escT OKFHMN_15300 0.42 -1.9
2,958,363 - escT OKFHMN_15300 0.45 +0.2
2,958,449 + escT OKFHMN_15300 0.56 +0.2
2,958,660 - escT OKFHMN_15300 0.83 +0.2

Or see this region's nucleotide sequence