Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13505

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurB and 5S_rrna are separated by 136 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides23S_rrna and Glu_trna are separated by 193 nucleotidesGlu_trna and 16S_rrna are separated by 85 nucleotides OKFHMN_13495: murB - UDP-N-acetylmuramate dehydrogenase, at 2,592,940 to 2,593,968 murB OKFHMN_13500: 5S_rrna - 5S ribosomal RNA, at 2,594,105 to 2,594,220 _rrna OKFHMN_13505: 23S_rrna - 23S ribosomal RNA, at 2,594,315 to 2,597,219 _rrna OKFHMN_13515: Glu_trna - tRNA-Glu(ttc), at 2,597,413 to 2,597,488 _trna OKFHMN_13520: 16S_rrna - 16S ribosomal RNA, at 2,597,574 to 2,599,115 _rrna Position (kb) 2594 2595 2596 2597 2598Strain fitness (log2 ratio) -2 -1 0 1at 2594.028 kb on + strandat 2594.032 kb on + strandat 2594.032 kb on + strandat 2594.032 kb on + strandat 2594.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,594,028 + -0.2
2,594,032 + -0.3
2,594,032 + -1.9
2,594,032 + -2.1
2,594,054 - +1.3

Or see this region's nucleotide sequence