Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13375

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,569,226	+	nudC	OKFHMN_13365	0.89	+1.1
2,569,252	+				+0.5
2,569,303	+				-0.1
2,569,303	+				+0.3
2,569,314	+				+1.9
2,569,314	+				-0.6
2,569,315	-				-0.2
2,569,326	+				+1.7
2,569,327	-				-0.4
2,569,389	-				-0.5
2,569,414	+				-0.3
2,569,454	-				+1.1
2,569,454	-				+0.9
2,569,454	-				-0.7
2,569,482	+	rsd	OKFHMN_13370	0.15	-0.8
2,569,482	+	rsd	OKFHMN_13370	0.15	+0.5
2,569,482	+	rsd	OKFHMN_13370	0.15	+0.2
2,569,482	+	rsd	OKFHMN_13370	0.15	-0.3
2,569,483	-	rsd	OKFHMN_13370	0.16	+1.0
2,569,483	-	rsd	OKFHMN_13370	0.16	-0.3
2,569,483	-	rsd	OKFHMN_13370	0.16	-2.4
2,569,483	-	rsd	OKFHMN_13370	0.16	-0.2
2,569,483	-	rsd	OKFHMN_13370	0.16	-0.5
2,569,486	+	rsd	OKFHMN_13370	0.16	+0.1
2,569,486	+	rsd	OKFHMN_13370	0.16	+0.1
2,569,508	+	rsd	OKFHMN_13370	0.21	+0.5
2,569,545	-	rsd	OKFHMN_13370	0.29	-0.1
2,569,622	-	rsd	OKFHMN_13370	0.45	+0.4
2,569,626	-	rsd	OKFHMN_13370	0.45	+0.8
2,569,626	-	rsd	OKFHMN_13370	0.45	+0.9
2,569,642	+	rsd	OKFHMN_13370	0.49	-0.4
2,569,643	-	rsd	OKFHMN_13370	0.49	+1.0
2,569,762	+	rsd	OKFHMN_13370	0.74	-1.7
2,569,766	+	rsd	OKFHMN_13370	0.75	-0.1
2,569,766	+	rsd	OKFHMN_13370	0.75	-0.8
2,569,910	+				-0.3
2,569,936	+				+0.0
2,570,004	+				-0.3
2,570,004	+				-1.0
2,570,007	+				-0.5
2,570,007	+				-0.4
2,570,007	+				-1.7
2,570,008	-				-0.4
2,570,099	+				-0.6
2,570,117	+				-2.4
2,570,118	-				-1.1
2,570,118	-				+0.2
2,570,217	+				+0.5
2,570,217	+				-0.3
2,570,218	-				-1.6
2,570,218	-				-0.1
2,570,219	+				-0.2
2,570,219	+				-0.7
2,570,281	+				+1.7
2,570,310	+	thiC	OKFHMN_13375	0.10	-0.4
2,570,311	-	thiC	OKFHMN_13375	0.10	-1.1
2,570,338	-	thiC	OKFHMN_13375	0.12	-1.2
2,570,448	-	thiC	OKFHMN_13375	0.17	-0.6
2,570,467	-	thiC	OKFHMN_13375	0.18	-1.3
2,570,521	+	thiC	OKFHMN_13375	0.21	+0.4
2,570,521	+	thiC	OKFHMN_13375	0.21	-0.6
2,570,571	+	thiC	OKFHMN_13375	0.24	-3.3
2,570,572	-	thiC	OKFHMN_13375	0.24	-1.6
2,570,660	-	thiC	OKFHMN_13375	0.29	-1.1
2,570,708	+	thiC	OKFHMN_13375	0.31	-0.2
2,570,756	+	thiC	OKFHMN_13375	0.34	-0.4
2,570,771	+	thiC	OKFHMN_13375	0.34	-0.1
2,570,772	-	thiC	OKFHMN_13375	0.34	-0.7
2,570,888	-	thiC	OKFHMN_13375	0.41	+0.3
2,570,888	-	thiC	OKFHMN_13375	0.41	-0.1
2,570,941	-	thiC	OKFHMN_13375	0.43	-0.2
2,570,942	+	thiC	OKFHMN_13375	0.43	-1.1
2,570,942	+	thiC	OKFHMN_13375	0.43	-1.2
2,570,994	-	thiC	OKFHMN_13375	0.46	+0.2
2,570,994	-	thiC	OKFHMN_13375	0.46	-3.1
2,571,007	-	thiC	OKFHMN_13375	0.47	-0.7
2,571,047	+	thiC	OKFHMN_13375	0.49	-0.5
2,571,102	+	thiC	OKFHMN_13375	0.52	+0.1
2,571,135	+	thiC	OKFHMN_13375	0.54	+0.5
2,571,135	+	thiC	OKFHMN_13375	0.54	-0.4
2,571,136	-	thiC	OKFHMN_13375	0.54	-0.3
2,571,317	+	thiC	OKFHMN_13375	0.63	-1.5
2,571,359	+	thiC	OKFHMN_13375	0.65	-0.5
2,571,359	+	thiC	OKFHMN_13375	0.65	-1.3
2,571,360	-	thiC	OKFHMN_13375	0.66	-2.9
2,571,360	-	thiC	OKFHMN_13375	0.66	-0.1
2,571,469	+	thiC	OKFHMN_13375	0.71	-1.3
2,571,496	-	thiC	OKFHMN_13375	0.73	-2.4
2,571,511	+	thiC	OKFHMN_13375	0.73	-0.4
2,571,512	-	thiC	OKFHMN_13375	0.74	-0.9
2,571,515	+	thiC	OKFHMN_13375	0.74	-0.7
2,571,516	-	thiC	OKFHMN_13375	0.74	+0.4
2,571,534	+	thiC	OKFHMN_13375	0.75	+0.0
2,571,601	-	thiC	OKFHMN_13375	0.78	-1.2
2,571,604	+	thiC	OKFHMN_13375	0.78	-0.5
2,571,604	+	thiC	OKFHMN_13375	0.78	-0.7
2,571,632	+	thiC	OKFHMN_13375	0.80	-0.1
2,571,633	-	thiC	OKFHMN_13375	0.80	-0.4
2,571,648	-	thiC	OKFHMN_13375	0.81	-1.3
2,571,659	+	thiC	OKFHMN_13375	0.81	-0.1
2,571,666	+	thiC	OKFHMN_13375	0.82	-1.7
2,571,667	-	thiC	OKFHMN_13375	0.82	-1.6
2,571,668	+	thiC	OKFHMN_13375	0.82	-2.1
2,571,668	+	thiC	OKFHMN_13375	0.82	-1.0
2,571,797	+	thiC	OKFHMN_13375	0.89	-0.4
2,571,810	+	thiC	OKFHMN_13375	0.89	-0.5
2,571,915	+				-1.0
2,571,932	+				-0.6
2,571,932	+				-0.6
2,571,946	+				-0.1
2,571,954	-				+1.2
2,571,991	-				-0.5
2,571,991	-				-0.1
2,571,999	-				+0.4
2,572,016	+				-0.3
2,572,016	+				-0.6
2,572,017	-				-0.5
2,572,017	-				-0.1
2,572,077	+	thiE	OKFHMN_13380	0.10	+0.7
2,572,077	+	thiE	OKFHMN_13380	0.10	-0.5
2,572,077	+	thiE	OKFHMN_13380	0.10	-1.8
2,572,077	+	thiE	OKFHMN_13380	0.10	-1.0
2,572,077	+	thiE	OKFHMN_13380	0.10	-1.3
2,572,078	-	thiE	OKFHMN_13380	0.10	-1.7
2,572,078	-	thiE	OKFHMN_13380	0.10	-0.6
2,572,110	+	thiE	OKFHMN_13380	0.15	+1.3
2,572,110	+	thiE	OKFHMN_13380	0.15	+1.0
2,572,111	-	thiE	OKFHMN_13380	0.15	+2.2
2,572,114	+	thiE	OKFHMN_13380	0.16	-0.8
2,572,114	+	thiE	OKFHMN_13380	0.16	+0.8
2,572,114	+	thiE	OKFHMN_13380	0.16	+0.2
2,572,115	-	thiE	OKFHMN_13380	0.16	+0.0
2,572,126	-	thiE	OKFHMN_13380	0.18	-1.4
2,572,126	-	thiE	OKFHMN_13380	0.18	-0.2
2,572,199	-	thiE	OKFHMN_13380	0.29	-0.8
2,572,385	+	thiE	OKFHMN_13380	0.58	-0.9
2,572,385	+	thiE	OKFHMN_13380	0.58	-0.3
2,572,386	-	thiE	OKFHMN_13380	0.59	-0.4
2,572,668	-				-1.4
2,572,760	+	thiF	OKFHMN_13385	0.16	+1.2
2,572,774	+	thiF	OKFHMN_13385	0.18	-1.5
2,572,776	+	thiF	OKFHMN_13385	0.18	-0.5
2,572,777	-	thiF	OKFHMN_13385	0.18	-0.1
2,572,835	-	thiF	OKFHMN_13385	0.26	-0.9
2,572,875	-	thiF	OKFHMN_13385	0.31	-0.5
2,572,948	+	thiF	OKFHMN_13385	0.41	+1.4
2,572,948	+	thiF	OKFHMN_13385	0.41	-1.4
2,572,948	+	thiF	OKFHMN_13385	0.41	-0.7
2,572,948	+	thiF	OKFHMN_13385	0.41	-0.8
2,572,949	-	thiF	OKFHMN_13385	0.41	-1.2
2,572,949	-	thiF	OKFHMN_13385	0.41	-0.0
2,572,949	-	thiF	OKFHMN_13385	0.41	+0.3
2,572,976	-	thiF	OKFHMN_13385	0.44	-0.3