Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12710

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_12705 and rbsA are separated by 113 nucleotidesrbsA and OKFHMN_12715 overlap by 4 nucleotidesOKFHMN_12715 and rbsB are separated by 18 nucleotides OKFHMN_12705: OKFHMN_12705 - hybrid sensor histidine kinase/response regulator, at 2,432,913 to 2,435,183 _12705 OKFHMN_12710: rbsA - Ribose import ATP-binding protein RbsA, at 2,435,297 to 2,436,817 rbsA OKFHMN_12715: OKFHMN_12715 - ribose ABC transporter permease, at 2,436,814 to 2,437,788 _12715 OKFHMN_12720: rbsB - transcriptional regulator, at 2,437,807 to 2,438,748 rbsB Position (kb) 2435 2436 2437Strain fitness (log2 ratio) -1 0 1 2 3at 2434.384 kb on + strand, within OKFHMN_12705at 2434.436 kb on + strand, within OKFHMN_12705at 2434.436 kb on + strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.437 kb on - strand, within OKFHMN_12705at 2434.438 kb on + strand, within OKFHMN_12705at 2434.439 kb on - strand, within OKFHMN_12705at 2434.599 kb on - strand, within OKFHMN_12705at 2434.599 kb on - strand, within OKFHMN_12705at 2434.625 kb on + strand, within OKFHMN_12705at 2434.664 kb on + strand, within OKFHMN_12705at 2434.706 kb on - strand, within OKFHMN_12705at 2434.711 kb on - strand, within OKFHMN_12705at 2434.851 kb on + strand, within OKFHMN_12705at 2434.929 kb on - strand, within OKFHMN_12705at 2435.019 kb on - strandat 2435.184 kb on - strandat 2435.211 kb on + strandat 2435.220 kb on + strandat 2435.220 kb on + strandat 2435.247 kb on + strandat 2435.248 kb on - strandat 2435.355 kb on - strandat 2435.384 kb on + strandat 2435.384 kb on + strandat 2435.385 kb on - strandat 2435.385 kb on - strandat 2435.385 kb on - strandat 2435.462 kb on + strand, within rbsAat 2435.462 kb on + strand, within rbsAat 2435.463 kb on - strand, within rbsAat 2435.463 kb on - strand, within rbsAat 2435.655 kb on + strand, within rbsAat 2435.767 kb on - strand, within rbsAat 2435.881 kb on + strand, within rbsAat 2435.885 kb on + strand, within rbsAat 2435.885 kb on + strand, within rbsAat 2435.885 kb on + strand, within rbsAat 2435.886 kb on - strand, within rbsAat 2435.913 kb on - strand, within rbsAat 2435.955 kb on - strand, within rbsAat 2436.327 kb on + strand, within rbsAat 2436.327 kb on + strand, within rbsAat 2436.327 kb on + strand, within rbsAat 2436.439 kb on + strand, within rbsAat 2436.440 kb on - strand, within rbsAat 2436.732 kb on + strandat 2436.763 kb on + strandat 2436.960 kb on - strand, within OKFHMN_12715at 2436.961 kb on - strand, within OKFHMN_12715at 2437.216 kb on + strand, within OKFHMN_12715at 2437.216 kb on + strand, within OKFHMN_12715at 2437.216 kb on + strand, within OKFHMN_12715at 2437.217 kb on - strand, within OKFHMN_12715at 2437.217 kb on - strand, within OKFHMN_12715at 2437.306 kb on + strand, within OKFHMN_12715at 2437.306 kb on + strand, within OKFHMN_12715at 2437.307 kb on - strand, within OKFHMN_12715at 2437.446 kb on + strand, within OKFHMN_12715at 2437.513 kb on - strand, within OKFHMN_12715at 2437.531 kb on + strand, within OKFHMN_12715at 2437.551 kb on - strand, within OKFHMN_12715at 2437.551 kb on - strand, within OKFHMN_12715at 2437.561 kb on + strand, within OKFHMN_12715at 2437.699 kb on + strandat 2437.699 kb on + strandat 2437.700 kb on - strandat 2437.700 kb on - strandat 2437.700 kb on - strandat 2437.700 kb on - strandat 2437.759 kb on + strandat 2437.759 kb on + strandat 2437.760 kb on - strandat 2437.787 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
2,434,384 + OKFHMN_12705 0.65 -0.7
2,434,436 + OKFHMN_12705 0.67 +1.9
2,434,436 + OKFHMN_12705 0.67 +0.0
2,434,437 - OKFHMN_12705 0.67 +0.6
2,434,437 - OKFHMN_12705 0.67 -0.1
2,434,437 - OKFHMN_12705 0.67 +1.7
2,434,437 - OKFHMN_12705 0.67 +0.1
2,434,437 - OKFHMN_12705 0.67 +0.2
2,434,437 - OKFHMN_12705 0.67 -0.1
2,434,438 + OKFHMN_12705 0.67 -0.2
2,434,439 - OKFHMN_12705 0.67 +0.6
2,434,599 - OKFHMN_12705 0.74 +0.0
2,434,599 - OKFHMN_12705 0.74 -0.3
2,434,625 + OKFHMN_12705 0.75 -0.9
2,434,664 + OKFHMN_12705 0.77 -0.9
2,434,706 - OKFHMN_12705 0.79 -0.1
2,434,711 - OKFHMN_12705 0.79 +0.6
2,434,851 + OKFHMN_12705 0.85 +0.0
2,434,929 - OKFHMN_12705 0.89 -0.1
2,435,019 - +0.2
2,435,184 - +0.0
2,435,211 + +3.0
2,435,220 + +0.0
2,435,220 + +0.4
2,435,247 + -1.2
2,435,248 - +0.5
2,435,355 - +2.6
2,435,384 + +0.2
2,435,384 + +0.1
2,435,385 - +0.5
2,435,385 - +0.1
2,435,385 - -0.5
2,435,462 + rbsA OKFHMN_12710 0.11 -0.7
2,435,462 + rbsA OKFHMN_12710 0.11 -0.1
2,435,463 - rbsA OKFHMN_12710 0.11 +0.3
2,435,463 - rbsA OKFHMN_12710 0.11 -0.0
2,435,655 + rbsA OKFHMN_12710 0.24 -1.4
2,435,767 - rbsA OKFHMN_12710 0.31 +0.4
2,435,881 + rbsA OKFHMN_12710 0.38 -0.7
2,435,885 + rbsA OKFHMN_12710 0.39 -0.9
2,435,885 + rbsA OKFHMN_12710 0.39 +0.1
2,435,885 + rbsA OKFHMN_12710 0.39 -0.3
2,435,886 - rbsA OKFHMN_12710 0.39 +0.5
2,435,913 - rbsA OKFHMN_12710 0.40 -0.0
2,435,955 - rbsA OKFHMN_12710 0.43 +0.7
2,436,327 + rbsA OKFHMN_12710 0.68 +0.6
2,436,327 + rbsA OKFHMN_12710 0.68 -0.1
2,436,327 + rbsA OKFHMN_12710 0.68 +0.1
2,436,439 + rbsA OKFHMN_12710 0.75 -0.3
2,436,440 - rbsA OKFHMN_12710 0.75 +1.4
2,436,732 + +0.0
2,436,763 + -0.1
2,436,960 - OKFHMN_12715 0.15 -0.1
2,436,961 - OKFHMN_12715 0.15 +0.3
2,437,216 + OKFHMN_12715 0.41 +0.4
2,437,216 + OKFHMN_12715 0.41 -0.3
2,437,216 + OKFHMN_12715 0.41 +0.3
2,437,217 - OKFHMN_12715 0.41 +0.1
2,437,217 - OKFHMN_12715 0.41 -0.1
2,437,306 + OKFHMN_12715 0.50 +0.5
2,437,306 + OKFHMN_12715 0.50 -0.2
2,437,307 - OKFHMN_12715 0.51 +1.2
2,437,446 + OKFHMN_12715 0.65 -0.6
2,437,513 - OKFHMN_12715 0.72 -0.1
2,437,531 + OKFHMN_12715 0.74 -0.4
2,437,551 - OKFHMN_12715 0.76 +0.4
2,437,551 - OKFHMN_12715 0.76 -1.3
2,437,561 + OKFHMN_12715 0.77 -0.4
2,437,699 + -0.1
2,437,699 + +0.8
2,437,700 - -0.1
2,437,700 - +0.0
2,437,700 - -0.1
2,437,700 - +3.1
2,437,759 + -0.5
2,437,759 + -1.4
2,437,760 - -0.2
2,437,787 - +0.1

Or see this region's nucleotide sequence