Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12485

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,391,578	+	dtpC	OKFHMN_12480	0.55	+1.8
2,391,579	-	dtpC	OKFHMN_12480	0.55	+0.1
2,391,579	-	dtpC	OKFHMN_12480	0.55	+0.1
2,391,634	-	dtpC	OKFHMN_12480	0.59	+0.3
2,391,682	-	dtpC	OKFHMN_12480	0.62	-0.3
2,391,690	-	dtpC	OKFHMN_12480	0.63	+0.6
2,391,693	+	dtpC	OKFHMN_12480	0.63	+0.2
2,391,694	-	dtpC	OKFHMN_12480	0.63	-0.5
2,391,694	-	dtpC	OKFHMN_12480	0.63	+0.2
2,391,702	-	dtpC	OKFHMN_12480	0.64	-0.9
2,391,844	-	dtpC	OKFHMN_12480	0.73	-0.3
2,391,924	-	dtpC	OKFHMN_12480	0.79	-0.1
2,391,945	+	dtpC	OKFHMN_12480	0.80	+0.2
2,392,009	+	dtpC	OKFHMN_12480	0.85	+0.8
2,392,010	-	dtpC	OKFHMN_12480	0.85	+0.4
2,392,052	+	dtpC	OKFHMN_12480	0.88	-0.1
2,392,286	-				+0.5
2,392,332	+				-0.2
2,392,354	+				-0.1
2,392,385	+				-0.0
2,392,385	+				-1.3
2,392,389	-				+0.0
2,392,391	+				+0.1
2,392,407	+				+0.6
2,392,407	+				+0.4
2,392,408	-				+0.7
2,392,430	+				-0.0
2,392,434	+				-0.0
2,392,434	+				-0.3
2,392,434	+				+0.2
2,392,515	-				+1.3
2,392,555	+				-0.2
2,392,601	+				+0.6
2,392,601	+				+0.5
2,392,640	+	lysS	OKFHMN_12485	0.11	-0.1
2,392,761	+	lysS	OKFHMN_12485	0.19	+0.5
2,392,761	+	lysS	OKFHMN_12485	0.19	-0.3
2,392,762	-	lysS	OKFHMN_12485	0.19	-0.3
2,392,762	-	lysS	OKFHMN_12485	0.19	-0.0
2,392,776	-	lysS	OKFHMN_12485	0.20	-0.1
2,392,794	+	lysS	OKFHMN_12485	0.21	-0.6
2,392,794	+	lysS	OKFHMN_12485	0.21	-1.1
2,392,833	-	lysS	OKFHMN_12485	0.24	+0.4
2,392,857	-	lysS	OKFHMN_12485	0.25	-0.0
2,392,918	+	lysS	OKFHMN_12485	0.30	+0.3
2,392,919	-	lysS	OKFHMN_12485	0.30	-1.3
2,392,934	+	lysS	OKFHMN_12485	0.31	+0.0
2,393,004	-	lysS	OKFHMN_12485	0.35	-0.1
2,393,004	-	lysS	OKFHMN_12485	0.35	+0.1
2,393,164	+	lysS	OKFHMN_12485	0.46	+0.2
2,393,169	-	lysS	OKFHMN_12485	0.46	-0.2
2,393,169	-	lysS	OKFHMN_12485	0.46	-0.1
2,393,172	+	lysS	OKFHMN_12485	0.46	-0.6
2,393,172	+	lysS	OKFHMN_12485	0.46	-0.5
2,393,172	+	lysS	OKFHMN_12485	0.46	-0.4
2,393,173	-	lysS	OKFHMN_12485	0.46	-0.8
2,393,173	-	lysS	OKFHMN_12485	0.46	-0.3
2,393,173	-	lysS	OKFHMN_12485	0.46	+0.4
2,393,196	+	lysS	OKFHMN_12485	0.48	+0.4
2,393,259	-	lysS	OKFHMN_12485	0.52	+0.2
2,393,267	+	lysS	OKFHMN_12485	0.53	-0.0
2,393,550	-	lysS	OKFHMN_12485	0.71	+0.1
2,393,579	+	lysS	OKFHMN_12485	0.73	-0.2
2,393,579	+	lysS	OKFHMN_12485	0.73	+0.1
2,393,580	-	lysS	OKFHMN_12485	0.73	+0.6
2,393,580	-	lysS	OKFHMN_12485	0.73	+0.8
2,393,580	-	lysS	OKFHMN_12485	0.73	-0.2
2,393,750	+	lysS	OKFHMN_12485	0.84	-1.0
2,393,759	-	lysS	OKFHMN_12485	0.85	-2.0
2,393,801	+	lysS	OKFHMN_12485	0.88	+0.3
2,393,808	-	lysS	OKFHMN_12485	0.88	+0.9
2,393,838	+				+0.6
2,393,839	-				+0.0
2,393,839	-				-0.1
2,393,850	+				-0.5
2,393,850	+				-2.4
2,393,868	+				+1.0
2,393,868	+				+0.0
2,393,903	+				-0.2
2,393,918	+				+0.1
2,393,939	+				-0.2
2,393,939	+				+0.2
2,393,940	-				-1.0
2,393,954	+				+0.2
2,393,997	+				+0.9
2,394,098	+				+0.4
2,394,099	-				+0.4
2,394,107	+				+0.4
2,394,124	+	ghoT	OKFHMN_12490	0.10	+0.1
2,394,155	-	ghoT	OKFHMN_12490	0.28	-0.1
2,394,174	+	ghoT	OKFHMN_12490	0.39	-1.7
2,394,175	-	ghoT	OKFHMN_12490	0.40	-0.0
2,394,175	-	ghoT	OKFHMN_12490	0.40	+0.1
2,394,186	+	ghoT	OKFHMN_12490	0.46	-0.4
2,394,271	+				+0.8
2,394,330	-				+0.4
2,394,345	+	ghoS	OKFHMN_12495	0.13	+0.9
2,394,379	+	ghoS	OKFHMN_12495	0.24	+0.4
2,394,388	-	ghoS	OKFHMN_12495	0.27	+0.0
2,394,489	+	ghoS	OKFHMN_12495	0.61	-0.5
2,394,509	+	ghoS	OKFHMN_12495	0.68	+0.6
2,394,510	-	ghoS	OKFHMN_12495	0.68	+0.1
2,394,510	-	ghoS	OKFHMN_12495	0.68	+1.1
2,394,580	-				-0.4
2,394,850	-				-1.5
2,394,891	-	yjdJ	OKFHMN_12500	0.22	+0.1
2,394,891	-	yjdJ	OKFHMN_12500	0.22	+0.2
2,394,891	-	yjdJ	OKFHMN_12500	0.22	-0.4