Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12450

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,381,304	-	dcuA	OKFHMN_12440	0.68	-0.9
2,381,304	-	dcuA	OKFHMN_12440	0.68	-0.7
2,381,336	+	dcuA	OKFHMN_12440	0.71	-1.2
2,381,337	-	dcuA	OKFHMN_12440	0.71	-1.5
2,381,373	-	dcuA	OKFHMN_12440	0.74	-0.8
2,381,585	-				-0.2
2,381,606	+				+0.8
2,381,713	-				+0.1
2,381,783	+				-0.4
2,381,783	+				-0.4
2,381,783	+				+0.7
2,381,783	+				+0.1
2,381,783	+				+0.1
2,381,784	-				+0.7
2,381,786	-				-0.5
2,381,873	+	cutA	OKFHMN_12445	0.13	-0.0
2,381,873	+	cutA	OKFHMN_12445	0.13	+0.6
2,381,873	+	cutA	OKFHMN_12445	0.13	+1.2
2,381,873	+	cutA	OKFHMN_12445	0.13	+0.7
2,381,873	+	cutA	OKFHMN_12445	0.13	+0.6
2,381,873	+	cutA	OKFHMN_12445	0.13	+0.2
2,381,873	+	cutA	OKFHMN_12445	0.13	-0.4
2,381,874	-	cutA	OKFHMN_12445	0.13	+0.3
2,381,874	-	cutA	OKFHMN_12445	0.13	+0.6
2,381,874	-	cutA	OKFHMN_12445	0.13	-0.2
2,381,877	+	cutA	OKFHMN_12445	0.14	-0.5
2,381,878	-	cutA	OKFHMN_12445	0.14	-1.3
2,381,968	-	cutA	OKFHMN_12445	0.41	-0.0
2,381,977	+	cutA	OKFHMN_12445	0.43	-0.0
2,382,038	+	cutA	OKFHMN_12445	0.61	+0.1
2,382,038	+	cutA	OKFHMN_12445	0.61	-0.2
2,382,110	+	cutA	OKFHMN_12445	0.83	+0.0
2,382,136	+				-0.4
2,382,137	-				+0.2
2,382,137	-				-0.4
2,382,137	-				+0.4
2,382,162	-				+0.2
2,382,175	+				-0.8
2,382,318	+	dsbD	OKFHMN_12450	0.10	-0.1
2,382,318	+	dsbD	OKFHMN_12450	0.10	+1.1
2,382,318	+	dsbD	OKFHMN_12450	0.10	-0.7
2,382,319	-	dsbD	OKFHMN_12450	0.10	+0.6
2,382,319	-	dsbD	OKFHMN_12450	0.10	-0.9
2,382,429	+	dsbD	OKFHMN_12450	0.17	+0.1
2,382,487	+	dsbD	OKFHMN_12450	0.20	+0.1
2,382,487	+	dsbD	OKFHMN_12450	0.20	-0.4
2,382,498	+	dsbD	OKFHMN_12450	0.21	-0.1
2,382,702	+	dsbD	OKFHMN_12450	0.33	+0.1
2,382,702	+	dsbD	OKFHMN_12450	0.33	-0.2
2,382,703	-	dsbD	OKFHMN_12450	0.33	-0.2
2,382,776	+	dsbD	OKFHMN_12450	0.37	+0.0
2,382,780	+	dsbD	OKFHMN_12450	0.37	+1.0
2,382,780	+	dsbD	OKFHMN_12450	0.37	-0.5
2,382,781	-	dsbD	OKFHMN_12450	0.38	+0.7
2,382,781	-	dsbD	OKFHMN_12450	0.38	-0.3
2,382,823	+	dsbD	OKFHMN_12450	0.40	+0.6
2,382,824	-	dsbD	OKFHMN_12450	0.40	+0.6
2,382,842	-	dsbD	OKFHMN_12450	0.41	+0.7
2,382,859	+	dsbD	OKFHMN_12450	0.42	-0.0
2,382,870	+	dsbD	OKFHMN_12450	0.43	-0.1
2,382,870	+	dsbD	OKFHMN_12450	0.43	+0.2
2,382,870	+	dsbD	OKFHMN_12450	0.43	-0.5
2,382,870	+	dsbD	OKFHMN_12450	0.43	+0.2
2,382,870	+	dsbD	OKFHMN_12450	0.43	+1.6
2,382,870	+	dsbD	OKFHMN_12450	0.43	+0.3
2,382,871	-	dsbD	OKFHMN_12450	0.43	-0.0
2,382,932	+	dsbD	OKFHMN_12450	0.46	+0.1
2,382,933	-	dsbD	OKFHMN_12450	0.46	+0.8
2,382,938	-	dsbD	OKFHMN_12450	0.47	-0.4
2,383,016	+	dsbD	OKFHMN_12450	0.51	+0.7
2,383,017	-	dsbD	OKFHMN_12450	0.51	-0.1
2,383,020	-	dsbD	OKFHMN_12450	0.52	+0.1
2,383,086	+	dsbD	OKFHMN_12450	0.55	+0.3
2,383,086	+	dsbD	OKFHMN_12450	0.55	-0.2
2,383,087	-	dsbD	OKFHMN_12450	0.56	+1.3
2,383,088	+	dsbD	OKFHMN_12450	0.56	+0.2
2,383,131	+	dsbD	OKFHMN_12450	0.58	+0.2
2,383,137	+	dsbD	OKFHMN_12450	0.58	+0.1
2,383,168	+	dsbD	OKFHMN_12450	0.60	+0.1
2,383,169	-	dsbD	OKFHMN_12450	0.60	+0.2
2,383,294	+	dsbD	OKFHMN_12450	0.68	+0.8
2,383,294	+	dsbD	OKFHMN_12450	0.68	+0.3
2,383,294	+	dsbD	OKFHMN_12450	0.68	-0.1
2,383,303	+	dsbD	OKFHMN_12450	0.68	-0.1
2,383,304	-	dsbD	OKFHMN_12450	0.68	+0.2
2,383,349	+	dsbD	OKFHMN_12450	0.71	-0.9
2,383,396	+	dsbD	OKFHMN_12450	0.74	+0.2
2,383,493	+	dsbD	OKFHMN_12450	0.79	-0.2
2,383,519	+	dsbD	OKFHMN_12450	0.81	-1.1
2,383,520	-	dsbD	OKFHMN_12450	0.81	-0.1
2,383,609	-	dsbD	OKFHMN_12450	0.86	+1.2
2,383,657	+	dsbD	OKFHMN_12450	0.89	+0.6
2,383,705	+				+0.0
2,383,715	+				-0.8
2,383,716	-				-0.0
2,383,716	-				-0.3
2,383,794	-				-0.5
2,383,894	+				-0.2
2,383,894	+				+0.2
2,383,991	-	yjdC	OKFHMN_12455	0.20	-0.1
2,383,991	-	yjdC	OKFHMN_12455	0.20	-0.1
2,383,991	-	yjdC	OKFHMN_12455	0.20	+0.5
2,384,056	+	yjdC	OKFHMN_12455	0.31	-0.0
2,384,056	+	yjdC	OKFHMN_12455	0.31	+0.5
2,384,057	-	yjdC	OKFHMN_12455	0.31	+2.0
2,384,057	-	yjdC	OKFHMN_12455	0.31	+0.9
2,384,057	-	yjdC	OKFHMN_12455	0.31	+0.0
2,384,308	+	yjdC	OKFHMN_12455	0.75	+0.1
2,384,309	-	yjdC	OKFHMN_12455	0.75	-1.1
2,384,309	-	yjdC	OKFHMN_12455	0.75	-0.0
2,384,344	+	yjdC	OKFHMN_12455	0.81	-0.2
2,384,539	+				+1.3
2,384,767	+				-1.4
2,384,798	+				+1.7
2,384,799	-				+0.5
2,384,799	-				-0.5
2,384,800	+				-0.2
2,384,800	+				-0.7
2,384,801	-				+0.5
2,384,806	+				+0.2
2,384,806	+				-0.2
2,384,806	+				-0.2
2,384,807	-				+0.3
2,384,807	-				+0.5
2,384,807	-				+0.1
2,384,810	+				+0.6