Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11110

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,099,403	+				-1.6
2,099,412	-				-5.5
2,099,496	-				-3.5
2,099,668	-	thrB	OKFHMN_11105	0.26	-4.1
2,099,772	-	thrB	OKFHMN_11105	0.38	-4.5
2,099,814	+	thrB	OKFHMN_11105	0.42	-3.5
2,099,904	+	thrB	OKFHMN_11105	0.52	-4.1
2,099,905	-	thrB	OKFHMN_11105	0.52	-2.7
2,099,936	+	thrB	OKFHMN_11105	0.55	-4.3
2,099,937	-	thrB	OKFHMN_11105	0.55	-2.4
2,099,937	-	thrB	OKFHMN_11105	0.55	-4.8
2,100,087	+	thrB	OKFHMN_11105	0.71	-3.3
2,100,193	-	thrB	OKFHMN_11105	0.83	-2.8
2,100,250	+	thrB	OKFHMN_11105	0.89	-0.8
2,100,250	+	thrB	OKFHMN_11105	0.89	-3.0
2,100,251	-	thrB	OKFHMN_11105	0.89	-3.5
2,100,251	-	thrB	OKFHMN_11105	0.89	-4.2
2,100,251	-	thrB	OKFHMN_11105	0.89	-5.6
2,100,251	-	thrB	OKFHMN_11105	0.89	-4.8
2,100,251	-	thrB	OKFHMN_11105	0.89	-4.2
2,100,348	+				-1.2
2,100,366	-				-1.5
2,100,382	+				-3.4
2,100,383	-				-0.9
2,100,386	+				-2.0
2,100,386	+				-3.4
2,100,387	-				-0.9
2,100,465	+				-4.1
2,100,468	+				-3.0
2,100,478	-				-0.5
2,100,575	-				-3.1
2,100,664	+	thrA	OKFHMN_11110	0.13	-2.5
2,100,771	-	thrA	OKFHMN_11110	0.17	-0.2
2,100,775	+	thrA	OKFHMN_11110	0.17	-2.5
2,100,782	+	thrA	OKFHMN_11110	0.17	-1.8
2,100,823	+	thrA	OKFHMN_11110	0.19	-3.7
2,100,848	-	thrA	OKFHMN_11110	0.20	-2.4
2,100,893	-	thrA	OKFHMN_11110	0.22	-1.7
2,100,895	-	thrA	OKFHMN_11110	0.22	-1.8
2,100,895	-	thrA	OKFHMN_11110	0.22	-2.0
2,101,006	-	thrA	OKFHMN_11110	0.26	-1.9
2,101,015	+	thrA	OKFHMN_11110	0.27	-4.1
2,101,016	-	thrA	OKFHMN_11110	0.27	-3.4
2,101,053	+	thrA	OKFHMN_11110	0.28	-2.4
2,101,053	+	thrA	OKFHMN_11110	0.28	-3.3
2,101,054	-	thrA	OKFHMN_11110	0.28	-1.2
2,101,056	+	thrA	OKFHMN_11110	0.28	-2.1
2,101,057	-	thrA	OKFHMN_11110	0.28	-1.6
2,101,057	-	thrA	OKFHMN_11110	0.28	-2.0
2,101,189	-	thrA	OKFHMN_11110	0.34	-0.5
2,101,271	+	thrA	OKFHMN_11110	0.37	-3.8
2,101,307	-	thrA	OKFHMN_11110	0.39	-3.9
2,101,325	+	thrA	OKFHMN_11110	0.39	-6.1
2,101,325	+	thrA	OKFHMN_11110	0.39	-4.5
2,101,326	-	thrA	OKFHMN_11110	0.39	-1.5
2,101,326	-	thrA	OKFHMN_11110	0.39	-3.5
2,101,326	-	thrA	OKFHMN_11110	0.39	-2.1
2,101,487	-	thrA	OKFHMN_11110	0.46	-3.2
2,101,490	+	thrA	OKFHMN_11110	0.46	-3.7
2,101,531	+	thrA	OKFHMN_11110	0.48	-4.2
2,101,546	+	thrA	OKFHMN_11110	0.48	-3.5
2,101,604	-	thrA	OKFHMN_11110	0.51	-3.1
2,101,604	-	thrA	OKFHMN_11110	0.51	-2.8
2,101,613	+	thrA	OKFHMN_11110	0.51	-2.3
2,101,614	-	thrA	OKFHMN_11110	0.51	-3.6
2,101,614	-	thrA	OKFHMN_11110	0.51	-4.1
2,101,661	+	thrA	OKFHMN_11110	0.53	-1.6
2,101,771	+	thrA	OKFHMN_11110	0.57	-4.0
2,101,771	+	thrA	OKFHMN_11110	0.57	-5.3
2,102,043	+	thrA	OKFHMN_11110	0.68	-2.2
2,102,119	+	thrA	OKFHMN_11110	0.72	-4.1
2,102,119	+	thrA	OKFHMN_11110	0.72	-2.4
2,102,119	+	thrA	OKFHMN_11110	0.72	-2.1
2,102,119	+	thrA	OKFHMN_11110	0.72	-5.4
2,102,120	-	thrA	OKFHMN_11110	0.72	-2.0
2,102,120	-	thrA	OKFHMN_11110	0.72	-2.9
2,102,121	+	thrA	OKFHMN_11110	0.72	-3.0
2,102,122	-	thrA	OKFHMN_11110	0.72	-1.7
2,102,122	-	thrA	OKFHMN_11110	0.72	-4.8
2,102,123	+	thrA	OKFHMN_11110	0.72	-2.7
2,102,123	+	thrA	OKFHMN_11110	0.72	-3.9
2,102,124	-	thrA	OKFHMN_11110	0.72	-2.6
2,102,124	-	thrA	OKFHMN_11110	0.72	-4.8
2,102,299	+	thrA	OKFHMN_11110	0.79	-3.3
2,102,330	-	thrA	OKFHMN_11110	0.80	-3.2
2,102,330	-	thrA	OKFHMN_11110	0.80	-3.4
2,102,340	+	thrA	OKFHMN_11110	0.81	-3.5
2,102,420	-	thrA	OKFHMN_11110	0.84	-1.4
2,102,494	+	thrA	OKFHMN_11110	0.87	-4.4
2,102,495	-	thrA	OKFHMN_11110	0.87	-2.2
2,102,495	-	thrA	OKFHMN_11110	0.87	-2.1
2,102,495	-	thrA	OKFHMN_11110	0.87	-2.6
2,102,495	-	thrA	OKFHMN_11110	0.87	-1.8
2,102,825	+				-4.1
2,102,825	+				-2.4
2,102,826	-				-0.2
2,102,914	-	thrL	OKFHMN_11115	0.18	-1.5
2,102,922	+	thrL	OKFHMN_11115	0.27	-4.0
2,102,923	-	thrL	OKFHMN_11115	0.29	-2.4
2,102,929	-	thrL	OKFHMN_11115	0.36	-2.3
2,102,971	-	thrL	OKFHMN_11115	0.86	-2.3
2,102,971	-	thrL	OKFHMN_11115	0.86	-3.9
2,102,993	+				-3.5
2,102,993	+				-2.5
2,102,993	+				-4.0
2,102,994	-				-1.6
2,103,029	-				+0.8
2,103,042	+				-0.9
2,103,043	-				+0.5
2,103,142	+				+0.5
2,103,142	+				-0.9
2,103,142	+				-0.6
2,103,143	-				+0.7
2,103,143	-				-0.0
2,103,143	-				+1.1
2,103,179	-				+0.7
2,103,182	+				-1.2
2,103,186	-				+0.6
2,103,219	+				-1.7
2,103,283	+	lasT	OKFHMN_11120	0.13	-1.6
2,103,302	-	lasT	OKFHMN_11120	0.15	-0.0
2,103,413	-	lasT	OKFHMN_11120	0.32	-0.3
2,103,432	-	lasT	OKFHMN_11120	0.34	+0.2
2,103,624	-	lasT	OKFHMN_11120	0.62	+0.5