Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10815

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespY1 and djlA are separated by 294 nucleotidesdjlA and lptD are separated by 233 nucleotides OKFHMN_10810: espY1 - Type III secretion system effector EspY1, at 2,038,990 to 2,039,727 espY1 OKFHMN_10815: djlA - co-chaperone DjlA, at 2,040,022 to 2,040,858 djlA OKFHMN_10820: lptD - LPS assembly protein LptD, at 2,041,092 to 2,043,446 lptD Position (kb) 2040 2041Strain fitness (log2 ratio) -2 -1 0 1at 2039.104 kb on + strand, within espY1at 2039.105 kb on - strand, within espY1at 2039.105 kb on - strand, within espY1at 2039.252 kb on + strand, within espY1at 2039.252 kb on + strand, within espY1at 2039.293 kb on - strand, within espY1at 2039.317 kb on + strand, within espY1at 2039.600 kb on - strand, within espY1at 2039.626 kb on - strand, within espY1at 2039.667 kb on - strandat 2039.781 kb on + strandat 2039.831 kb on - strandat 2039.917 kb on - strandat 2039.943 kb on + strandat 2039.988 kb on + strandat 2040.027 kb on + strandat 2040.046 kb on - strandat 2040.056 kb on + strandat 2040.160 kb on - strand, within djlAat 2040.160 kb on - strand, within djlAat 2040.216 kb on + strand, within djlAat 2040.217 kb on - strand, within djlAat 2040.375 kb on - strand, within djlAat 2040.375 kb on - strand, within djlAat 2040.375 kb on - strand, within djlAat 2040.610 kb on - strand, within djlAat 2040.720 kb on + strand, within djlAat 2040.735 kb on + strand, within djlAat 2040.745 kb on - strand, within djlAat 2040.796 kb on + strandat 2040.838 kb on - strandat 2040.838 kb on - strandat 2040.839 kb on + strandat 2040.840 kb on - strandat 2040.840 kb on - strandat 2040.840 kb on - strandat 2040.840 kb on - strandat 2040.840 kb on - strandat 2040.883 kb on + strandat 2040.883 kb on + strandat 2040.883 kb on + strandat 2040.885 kb on + strandat 2040.886 kb on - strandat 2040.886 kb on - strandat 2040.952 kb on + strandat 2040.952 kb on + strandat 2040.953 kb on - strandat 2040.953 kb on - strandat 2040.953 kb on - strandat 2041.005 kb on - strandat 2041.028 kb on + strandat 2041.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,039,104 + espY1 OKFHMN_10810 0.15 -1.9
2,039,105 - espY1 OKFHMN_10810 0.16 -0.4
2,039,105 - espY1 OKFHMN_10810 0.16 +0.4
2,039,252 + espY1 OKFHMN_10810 0.36 +1.3
2,039,252 + espY1 OKFHMN_10810 0.36 +1.2
2,039,293 - espY1 OKFHMN_10810 0.41 -0.1
2,039,317 + espY1 OKFHMN_10810 0.44 +0.4
2,039,600 - espY1 OKFHMN_10810 0.83 -0.3
2,039,626 - espY1 OKFHMN_10810 0.86 +0.2
2,039,667 - -0.0
2,039,781 + +0.5
2,039,831 - -0.4
2,039,917 - -0.3
2,039,943 + -0.2
2,039,988 + -0.3
2,040,027 + +0.2
2,040,046 - +0.9
2,040,056 + +0.3
2,040,160 - djlA OKFHMN_10815 0.16 -0.3
2,040,160 - djlA OKFHMN_10815 0.16 -0.0
2,040,216 + djlA OKFHMN_10815 0.23 +0.5
2,040,217 - djlA OKFHMN_10815 0.23 -0.5
2,040,375 - djlA OKFHMN_10815 0.42 +0.1
2,040,375 - djlA OKFHMN_10815 0.42 -0.0
2,040,375 - djlA OKFHMN_10815 0.42 +0.5
2,040,610 - djlA OKFHMN_10815 0.70 -0.1
2,040,720 + djlA OKFHMN_10815 0.83 +1.0
2,040,735 + djlA OKFHMN_10815 0.85 -0.8
2,040,745 - djlA OKFHMN_10815 0.86 -0.3
2,040,796 + -0.9
2,040,838 - +0.1
2,040,838 - -0.1
2,040,839 + -0.0
2,040,840 - +0.0
2,040,840 - -1.4
2,040,840 - +1.1
2,040,840 - +0.1
2,040,840 - -1.0
2,040,883 + -1.6
2,040,883 + -0.5
2,040,883 + -0.7
2,040,885 + -1.0
2,040,886 - +0.4
2,040,886 - +0.1
2,040,952 + -0.3
2,040,952 + +1.1
2,040,953 - -0.1
2,040,953 - -1.1
2,040,953 - +0.1
2,041,005 - -0.1
2,041,028 + -0.6
2,041,028 + +0.6

Or see this region's nucleotide sequence