Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pcnB and folK overlap by 4 nucleotides folK and OKFHMN_10365 are separated by 280 nucleotides OKFHMN_10365 and ecpD are separated by 86 nucleotides
OKFHMN_10355: pcnB - polynucleotide adenylyltransferase PcnB, at 1,939,777 to 1,941,141
pcnB
OKFHMN_10360: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 1,941,138 to 1,941,620
folK
OKFHMN_10365: OKFHMN_10365 - fimbrial protein, at 1,941,901 to 1,942,497
_10365
OKFHMN_10370: ecpD - fimbrial chaperone, at 1,942,584 to 1,943,309
ecpD
Position (kb)
1941
1942 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1940.248 kb on + strand, within pcnB at 1940.248 kb on + strand, within pcnB at 1940.363 kb on + strand, within pcnB at 1940.364 kb on - strand, within pcnB at 1940.367 kb on + strand, within pcnB at 1940.367 kb on + strand, within pcnB at 1940.505 kb on - strand, within pcnB at 1940.522 kb on - strand, within pcnB at 1940.530 kb on + strand, within pcnB at 1940.532 kb on + strand, within pcnB at 1940.880 kb on + strand, within pcnB at 1940.880 kb on + strand, within pcnB at 1941.568 kb on + strand, within folK at 1941.569 kb on - strand, within folK at 1941.645 kb on + strand at 1941.793 kb on - strand at 1941.849 kb on + strand at 1941.899 kb on + strand at 1941.960 kb on - strand at 1941.960 kb on - strand at 1941.988 kb on - strand, within OKFHMN_10365 at 1942.023 kb on - strand, within OKFHMN_10365 at 1942.033 kb on - strand, within OKFHMN_10365 at 1942.038 kb on + strand, within OKFHMN_10365 at 1942.039 kb on - strand, within OKFHMN_10365 at 1942.039 kb on - strand, within OKFHMN_10365 at 1942.188 kb on - strand, within OKFHMN_10365 at 1942.233 kb on + strand, within OKFHMN_10365 at 1942.234 kb on - strand, within OKFHMN_10365 at 1942.239 kb on + strand, within OKFHMN_10365 at 1942.403 kb on + strand, within OKFHMN_10365 at 1942.404 kb on - strand, within OKFHMN_10365 at 1942.423 kb on - strand, within OKFHMN_10365 at 1942.460 kb on + strand at 1942.478 kb on - strand at 1942.489 kb on + strand at 1942.489 kb on + strand at 1942.490 kb on - strand at 1942.490 kb on - strand at 1942.491 kb on + strand at 1942.563 kb on + strand at 1942.583 kb on + strand at 1942.583 kb on + strand at 1942.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,940,248 + pcnB OKFHMN_10355 0.35 -0.4 1,940,248 + pcnB OKFHMN_10355 0.35 +0.0 1,940,363 + pcnB OKFHMN_10355 0.43 -0.0 1,940,364 - pcnB OKFHMN_10355 0.43 +0.2 1,940,367 + pcnB OKFHMN_10355 0.43 +0.0 1,940,367 + pcnB OKFHMN_10355 0.43 -0.7 1,940,505 - pcnB OKFHMN_10355 0.53 -0.9 1,940,522 - pcnB OKFHMN_10355 0.55 -0.3 1,940,530 + pcnB OKFHMN_10355 0.55 -0.1 1,940,532 + pcnB OKFHMN_10355 0.55 -0.0 1,940,880 + pcnB OKFHMN_10355 0.81 -0.2 1,940,880 + pcnB OKFHMN_10355 0.81 -0.9 1,941,568 + folK OKFHMN_10360 0.89 -2.8 1,941,569 - folK OKFHMN_10360 0.89 -2.1 1,941,645 + -0.8 1,941,793 - +1.2 1,941,849 + +0.1 1,941,899 + +2.0 1,941,960 - -0.6 1,941,960 - +0.3 1,941,988 - OKFHMN_10365 0.15 +0.3 1,942,023 - OKFHMN_10365 0.20 +0.8 1,942,033 - OKFHMN_10365 0.22 -2.7 1,942,038 + OKFHMN_10365 0.23 -0.1 1,942,039 - OKFHMN_10365 0.23 -0.5 1,942,039 - OKFHMN_10365 0.23 +1.0 1,942,188 - OKFHMN_10365 0.48 -0.4 1,942,233 + OKFHMN_10365 0.56 +0.0 1,942,234 - OKFHMN_10365 0.56 -0.5 1,942,239 + OKFHMN_10365 0.57 +0.2 1,942,403 + OKFHMN_10365 0.84 -0.7 1,942,404 - OKFHMN_10365 0.84 +0.2 1,942,423 - OKFHMN_10365 0.87 +1.5 1,942,460 + -0.0 1,942,478 - +1.1 1,942,489 + +0.0 1,942,489 + -0.5 1,942,490 - +0.7 1,942,490 - +0.1 1,942,491 + +0.1 1,942,563 + -1.2 1,942,583 + +0.2 1,942,583 + +0.4 1,942,584 - -1.6
Or see this region's nucleotide sequence