Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10060

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,878,104	+	metN	OKFHMN_10050	0.86	+0.2
1,878,123	+	metN	OKFHMN_10050	0.88	+0.4
1,878,138	-	metN	OKFHMN_10050	0.89	-0.3
1,878,183	-				+1.0
1,878,183	-				-0.5
1,878,221	-				-1.3
1,878,232	+				+0.6
1,878,240	+				+0.5
1,878,241	-				-1.0
1,878,378	+	metI	OKFHMN_10055	0.21	+0.0
1,878,398	-	metI	OKFHMN_10055	0.24	+0.7
1,878,549	+	metI	OKFHMN_10055	0.47	+0.8
1,878,596	+	metI	OKFHMN_10055	0.54	+0.7
1,878,693	+	metI	OKFHMN_10055	0.69	-0.3
1,878,694	-	metI	OKFHMN_10055	0.69	+0.8
1,878,694	-	metI	OKFHMN_10055	0.69	-1.6
1,878,769	+	metI	OKFHMN_10055	0.81	-1.5
1,878,775	+	metI	OKFHMN_10055	0.82	-0.3
1,878,775	+	metI	OKFHMN_10055	0.82	-0.2
1,878,791	-	metI	OKFHMN_10055	0.84	-0.5
1,878,811	-	metI	OKFHMN_10055	0.87	+0.7
1,878,811	-	metI	OKFHMN_10055	0.87	+0.2
1,878,821	+	metI	OKFHMN_10055	0.89	-0.2
1,878,846	-				-0.4
1,878,928	+				-1.3
1,878,933	+				-0.8
1,878,933	+				-1.3
1,878,933	+				-1.5
1,878,934	-				-0.6
1,879,033	-	metQ	OKFHMN_10060	0.12	-2.6
1,879,102	+	metQ	OKFHMN_10060	0.21	-0.8
1,879,103	-	metQ	OKFHMN_10060	0.21	-0.7
1,879,138	+	metQ	OKFHMN_10060	0.25	-0.5
1,879,197	+	metQ	OKFHMN_10060	0.32	-1.2
1,879,354	-	metQ	OKFHMN_10060	0.51	-2.0
1,879,534	-	metQ	OKFHMN_10060	0.74	-1.9
1,879,536	+	metQ	OKFHMN_10060	0.74	-1.7
1,879,536	+	metQ	OKFHMN_10060	0.74	-2.2
1,879,536	+	metQ	OKFHMN_10060	0.74	-1.1
1,879,536	+	metQ	OKFHMN_10060	0.74	-1.1
1,879,546	+	metQ	OKFHMN_10060	0.75	-1.4
1,879,546	+	metQ	OKFHMN_10060	0.75	-1.9
1,879,547	-	metQ	OKFHMN_10060	0.75	-1.0
1,879,599	+	metQ	OKFHMN_10060	0.81	-1.6
1,879,599	+	metQ	OKFHMN_10060	0.81	-1.4
1,879,613	-	metQ	OKFHMN_10060	0.83	-1.9
1,879,616	+	metQ	OKFHMN_10060	0.84	-1.7
1,879,681	+				-1.1
1,879,737	+				+0.5
1,879,778	-				+0.5
1,879,815	+				-0.7
1,879,816	-				+0.2
1,879,850	+				+0.4
1,879,850	+				-1.2
1,879,850	+				-0.4
1,879,850	+				+1.2
1,879,850	+				+1.0
1,879,851	-				+0.8
1,879,863	+				-0.1
1,879,864	-				+0.3
1,879,866	+				-0.7
1,879,893	-				+0.5
1,880,022	+	rcsF	OKFHMN_10065	0.38	-0.5
1,880,180	+	rcsF	OKFHMN_10065	0.77	-1.0
1,880,187	+	rcsF	OKFHMN_10065	0.79	+0.5
1,880,188	-	rcsF	OKFHMN_10065	0.79	+0.8
1,880,234	+				+0.4
1,880,234	+				+0.2
1,880,234	+				-0.3
1,880,235	-				-1.9
1,880,235	-				-0.6
1,880,235	-				-0.2
1,880,235	-				+0.7
1,880,239	-				+1.1
1,880,239	-				-0.2
1,880,293	+				-1.1
1,880,300	+				+0.1
1,880,300	+				-0.4
1,880,313	+				-0.7
1,880,375	-	tsaA	OKFHMN_10070	0.15	-2.0
1,880,375	-	tsaA	OKFHMN_10070	0.15	+0.3
1,880,437	+	tsaA	OKFHMN_10070	0.24	+0.7
1,880,570	+	tsaA	OKFHMN_10070	0.43	-0.2
1,880,581	+	tsaA	OKFHMN_10070	0.44	+0.3
1,880,581	+	tsaA	OKFHMN_10070	0.44	-0.9
1,880,722	-	tsaA	OKFHMN_10070	0.64	+0.1