Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09825

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09820 and OKFHMN_09825 are separated by 68 nucleotidesOKFHMN_09825 and OKFHMN_09830 are separated by 157 nucleotides OKFHMN_09820: OKFHMN_09820 - Sel1 domain protein repeat-containing protein, at 1,828,729 to 1,829,256 _09820 OKFHMN_09825: OKFHMN_09825 - RHS repeat protein, at 1,829,325 to 1,830,857 _09825 OKFHMN_09830: OKFHMN_09830 - Ankyrin repeat containing virulence factor, at 1,831,015 to 1,831,731 _09830 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1 2at 1828.475 kb on - strandat 1828.475 kb on - strandat 1828.506 kb on + strandat 1828.572 kb on - strandat 1829.064 kb on + strand, within OKFHMN_09820at 1829.200 kb on - strand, within OKFHMN_09820at 1829.250 kb on + strandat 1829.257 kb on - strandat 1829.288 kb on - strandat 1829.326 kb on + strandat 1829.444 kb on + strandat 1829.445 kb on - strandat 1829.498 kb on + strand, within OKFHMN_09825at 1829.579 kb on + strand, within OKFHMN_09825at 1829.619 kb on + strand, within OKFHMN_09825at 1829.619 kb on + strand, within OKFHMN_09825at 1829.670 kb on - strand, within OKFHMN_09825at 1829.739 kb on - strand, within OKFHMN_09825at 1829.740 kb on + strand, within OKFHMN_09825at 1829.745 kb on - strand, within OKFHMN_09825at 1829.745 kb on - strand, within OKFHMN_09825at 1829.870 kb on + strand, within OKFHMN_09825at 1829.870 kb on + strand, within OKFHMN_09825at 1829.871 kb on - strand, within OKFHMN_09825at 1829.871 kb on - strand, within OKFHMN_09825at 1829.872 kb on + strand, within OKFHMN_09825at 1829.872 kb on + strand, within OKFHMN_09825at 1829.872 kb on + strand, within OKFHMN_09825at 1829.873 kb on - strand, within OKFHMN_09825at 1829.873 kb on - strand, within OKFHMN_09825at 1829.873 kb on - strand, within OKFHMN_09825at 1829.893 kb on + strand, within OKFHMN_09825at 1829.894 kb on - strand, within OKFHMN_09825at 1829.894 kb on - strand, within OKFHMN_09825at 1829.894 kb on - strand, within OKFHMN_09825at 1829.912 kb on - strand, within OKFHMN_09825at 1829.912 kb on - strand, within OKFHMN_09825at 1829.936 kb on - strand, within OKFHMN_09825at 1830.113 kb on - strand, within OKFHMN_09825at 1830.845 kb on - strandat 1830.845 kb on - strandat 1830.874 kb on - strandat 1830.947 kb on + strandat 1831.527 kb on + strand, within OKFHMN_09830at 1831.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,828,475 - +2.1
1,828,475 - +0.1
1,828,506 + +0.6
1,828,572 - -0.3
1,829,064 + OKFHMN_09820 0.63 +0.2
1,829,200 - OKFHMN_09820 0.89 +1.4
1,829,250 + +0.6
1,829,257 - -0.6
1,829,288 - -0.4
1,829,326 + -1.2
1,829,444 + -0.1
1,829,445 - -2.3
1,829,498 + OKFHMN_09825 0.11 +0.3
1,829,579 + OKFHMN_09825 0.17 -0.3
1,829,619 + OKFHMN_09825 0.19 +1.4
1,829,619 + OKFHMN_09825 0.19 +1.0
1,829,670 - OKFHMN_09825 0.23 -0.5
1,829,739 - OKFHMN_09825 0.27 -0.6
1,829,740 + OKFHMN_09825 0.27 -1.4
1,829,745 - OKFHMN_09825 0.27 -1.4
1,829,745 - OKFHMN_09825 0.27 -0.5
1,829,870 + OKFHMN_09825 0.36 +0.4
1,829,870 + OKFHMN_09825 0.36 +1.2
1,829,871 - OKFHMN_09825 0.36 -0.6
1,829,871 - OKFHMN_09825 0.36 -0.4
1,829,872 + OKFHMN_09825 0.36 -0.7
1,829,872 + OKFHMN_09825 0.36 +0.8
1,829,872 + OKFHMN_09825 0.36 +0.6
1,829,873 - OKFHMN_09825 0.36 -0.2
1,829,873 - OKFHMN_09825 0.36 +0.4
1,829,873 - OKFHMN_09825 0.36 -1.2
1,829,893 + OKFHMN_09825 0.37 -0.1
1,829,894 - OKFHMN_09825 0.37 +0.4
1,829,894 - OKFHMN_09825 0.37 +0.6
1,829,894 - OKFHMN_09825 0.37 +0.9
1,829,912 - OKFHMN_09825 0.38 +0.1
1,829,912 - OKFHMN_09825 0.38 -0.2
1,829,936 - OKFHMN_09825 0.40 +0.5
1,830,113 - OKFHMN_09825 0.51 -0.2
1,830,845 - +0.8
1,830,845 - -1.0
1,830,874 - +0.5
1,830,947 + -1.6
1,831,527 + OKFHMN_09830 0.71 -1.7
1,831,827 - +0.2

Or see this region's nucleotide sequence