Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09595

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09585 and OKFHMN_09590 are separated by 19 nucleotidesOKFHMN_09590 and OKFHMN_09595 overlap by 4 nucleotidesOKFHMN_09595 and OKFHMN_09600 overlap by 4 nucleotidesOKFHMN_09600 and yfdN overlap by 1 nucleotides OKFHMN_09585: OKFHMN_09585 - DNA-binding protein, at 1,791,167 to 1,791,976 _09585 OKFHMN_09590: OKFHMN_09590 - Endodeoxyribonuclease RusA, at 1,791,996 to 1,792,385 _09590 OKFHMN_09595: OKFHMN_09595 - LexA family transcriptional regulator, at 1,792,382 to 1,792,708 _09595 OKFHMN_09600: OKFHMN_09600 - phage N-6-adenine-methyltransferase, at 1,792,705 to 1,793,358 _09600 OKFHMN_09605: yfdN - Uncharacterized protein YfdN, at 1,793,358 to 1,793,846 yfdN Position (kb) 1792 1793Strain fitness (log2 ratio) -1 0 1 2at 1791.389 kb on - strand, within OKFHMN_09585at 1791.409 kb on - strand, within OKFHMN_09585at 1791.556 kb on + strand, within OKFHMN_09585at 1791.567 kb on - strand, within OKFHMN_09585at 1791.654 kb on - strand, within OKFHMN_09585at 1791.667 kb on + strand, within OKFHMN_09585at 1791.667 kb on + strand, within OKFHMN_09585at 1791.667 kb on + strand, within OKFHMN_09585at 1791.667 kb on + strand, within OKFHMN_09585at 1791.711 kb on + strand, within OKFHMN_09585at 1791.717 kb on + strand, within OKFHMN_09585at 1791.717 kb on + strand, within OKFHMN_09585at 1791.717 kb on + strand, within OKFHMN_09585at 1791.717 kb on + strand, within OKFHMN_09585at 1791.718 kb on - strand, within OKFHMN_09585at 1791.718 kb on - strand, within OKFHMN_09585at 1791.718 kb on - strand, within OKFHMN_09585at 1791.738 kb on + strand, within OKFHMN_09585at 1791.738 kb on + strand, within OKFHMN_09585at 1791.738 kb on + strand, within OKFHMN_09585at 1791.739 kb on - strand, within OKFHMN_09585at 1791.739 kb on - strand, within OKFHMN_09585at 1791.739 kb on - strand, within OKFHMN_09585at 1791.739 kb on - strand, within OKFHMN_09585at 1791.739 kb on - strand, within OKFHMN_09585at 1791.887 kb on + strand, within OKFHMN_09585at 1791.919 kb on - strandat 1791.928 kb on - strandat 1791.949 kb on + strandat 1791.950 kb on - strandat 1791.976 kb on + strandat 1792.151 kb on + strand, within OKFHMN_09590at 1792.151 kb on + strand, within OKFHMN_09590at 1792.153 kb on + strand, within OKFHMN_09590at 1792.254 kb on + strand, within OKFHMN_09590at 1792.310 kb on + strand, within OKFHMN_09590at 1792.535 kb on + strand, within OKFHMN_09595at 1792.669 kb on + strand, within OKFHMN_09595at 1792.842 kb on + strand, within OKFHMN_09600at 1792.842 kb on + strand, within OKFHMN_09600at 1792.842 kb on + strand, within OKFHMN_09600at 1792.941 kb on + strand, within OKFHMN_09600at 1793.000 kb on + strand, within OKFHMN_09600at 1793.063 kb on + strand, within OKFHMN_09600at 1793.063 kb on + strand, within OKFHMN_09600at 1793.121 kb on + strand, within OKFHMN_09600at 1793.247 kb on + strand, within OKFHMN_09600at 1793.247 kb on + strand, within OKFHMN_09600at 1793.345 kb on + strandat 1793.371 kb on + strandat 1793.521 kb on + strand, within yfdNat 1793.521 kb on + strand, within yfdN

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,791,389 - OKFHMN_09585 0.27 -0.2
1,791,409 - OKFHMN_09585 0.30 -0.4
1,791,556 + OKFHMN_09585 0.48 +0.1
1,791,567 - OKFHMN_09585 0.49 +0.4
1,791,654 - OKFHMN_09585 0.60 +0.9
1,791,667 + OKFHMN_09585 0.62 +1.0
1,791,667 + OKFHMN_09585 0.62 +2.1
1,791,667 + OKFHMN_09585 0.62 +0.1
1,791,667 + OKFHMN_09585 0.62 +1.4
1,791,711 + OKFHMN_09585 0.67 +0.0
1,791,717 + OKFHMN_09585 0.68 +0.4
1,791,717 + OKFHMN_09585 0.68 +0.2
1,791,717 + OKFHMN_09585 0.68 +2.0
1,791,717 + OKFHMN_09585 0.68 +0.2
1,791,718 - OKFHMN_09585 0.68 -0.3
1,791,718 - OKFHMN_09585 0.68 -0.1
1,791,718 - OKFHMN_09585 0.68 -0.7
1,791,738 + OKFHMN_09585 0.70 -0.3
1,791,738 + OKFHMN_09585 0.70 +1.7
1,791,738 + OKFHMN_09585 0.70 +0.4
1,791,739 - OKFHMN_09585 0.71 -0.8
1,791,739 - OKFHMN_09585 0.71 +0.2
1,791,739 - OKFHMN_09585 0.71 -0.2
1,791,739 - OKFHMN_09585 0.71 +0.4
1,791,739 - OKFHMN_09585 0.71 -0.2
1,791,887 + OKFHMN_09585 0.89 +0.6
1,791,919 - -0.4
1,791,928 - +0.1
1,791,949 + -1.2
1,791,950 - +0.3
1,791,976 + +2.3
1,792,151 + OKFHMN_09590 0.40 +0.8
1,792,151 + OKFHMN_09590 0.40 +0.4
1,792,153 + OKFHMN_09590 0.40 +0.3
1,792,254 + OKFHMN_09590 0.66 +0.2
1,792,310 + OKFHMN_09590 0.81 +0.4
1,792,535 + OKFHMN_09595 0.47 +0.3
1,792,669 + OKFHMN_09595 0.88 -0.6
1,792,842 + OKFHMN_09600 0.21 +0.9
1,792,842 + OKFHMN_09600 0.21 +0.5
1,792,842 + OKFHMN_09600 0.21 -0.5
1,792,941 + OKFHMN_09600 0.36 +0.0
1,793,000 + OKFHMN_09600 0.45 +1.2
1,793,063 + OKFHMN_09600 0.55 -0.1
1,793,063 + OKFHMN_09600 0.55 -0.1
1,793,121 + OKFHMN_09600 0.64 +0.4
1,793,247 + OKFHMN_09600 0.83 +0.5
1,793,247 + OKFHMN_09600 0.83 -0.2
1,793,345 + +0.3
1,793,371 + +1.9
1,793,521 + yfdN OKFHMN_09605 0.33 -0.1
1,793,521 + yfdN OKFHMN_09605 0.33 -0.1

Or see this region's nucleotide sequence