Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_08025 and OKFHMN_08030 overlap by 4 nucleotides OKFHMN_08030 and cueR are separated by 3 nucleotides cueR and emrA overlap by 4 nucleotides emrA and sunT overlap by 4 nucleotides
OKFHMN_08025: OKFHMN_08025 - IHP2, at 1,467,123 to 1,467,545
_08025
OKFHMN_08030: OKFHMN_08030 - hypothetical protein, at 1,467,542 to 1,467,745
_08030
OKFHMN_08035: cueR - Cu(I)-responsive transcriptional regulator, at 1,467,749 to 1,468,156
cueR
OKFHMN_08040: emrA - hemolysin D, at 1,468,153 to 1,469,328
emrA
OKFHMN_08045: sunT - type I secretion system permease/ATPase, at 1,469,325 to 1,471,487
sunT
Position (kb) 1468
1469
1470 Strain fitness (log2 ratio) -2
-1
0
1 at 1467.167 kb on - strand, within OKFHMN_08025 at 1467.243 kb on + strand, within OKFHMN_08025 at 1467.244 kb on - strand, within OKFHMN_08025 at 1467.351 kb on + strand, within OKFHMN_08025 at 1467.352 kb on - strand, within OKFHMN_08025 at 1467.574 kb on + strand, within OKFHMN_08030 at 1467.653 kb on - strand, within OKFHMN_08030 at 1467.715 kb on + strand, within OKFHMN_08030 at 1467.715 kb on + strand, within OKFHMN_08030 at 1467.716 kb on - strand, within OKFHMN_08030 at 1467.856 kb on + strand, within cueR at 1468.098 kb on + strand, within cueR at 1468.178 kb on + strand at 1468.317 kb on - strand, within emrA at 1468.329 kb on - strand, within emrA at 1468.329 kb on - strand, within emrA at 1468.332 kb on - strand, within emrA at 1468.372 kb on + strand, within emrA at 1468.403 kb on + strand, within emrA at 1468.404 kb on - strand, within emrA at 1468.413 kb on - strand, within emrA at 1468.706 kb on + strand, within emrA at 1468.709 kb on + strand, within emrA at 1468.772 kb on - strand, within emrA at 1468.772 kb on - strand, within emrA at 1468.772 kb on - strand, within emrA at 1468.899 kb on - strand, within emrA at 1469.307 kb on + strand at 1469.308 kb on - strand at 1469.308 kb on - strand at 1469.309 kb on + strand at 1469.310 kb on - strand at 1469.310 kb on - strand at 1469.310 kb on - strand at 1469.342 kb on + strand at 1469.448 kb on + strand at 1469.540 kb on - strand at 1470.043 kb on + strand, within sunT at 1470.044 kb on - strand, within sunT at 1470.067 kb on + strand, within sunT at 1470.068 kb on - strand, within sunT at 1470.089 kb on + strand, within sunT at 1470.090 kb on - strand, within sunT at 1470.090 kb on - strand, within sunT at 1470.160 kb on - strand, within sunT
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,467,167 - OKFHMN_08025 0.10 +0.7 1,467,243 + OKFHMN_08025 0.28 +0.8 1,467,244 - OKFHMN_08025 0.29 +0.4 1,467,351 + OKFHMN_08025 0.54 +0.5 1,467,352 - OKFHMN_08025 0.54 -0.0 1,467,574 + OKFHMN_08030 0.16 -0.1 1,467,653 - OKFHMN_08030 0.54 +0.9 1,467,715 + OKFHMN_08030 0.85 +0.3 1,467,715 + OKFHMN_08030 0.85 +0.7 1,467,716 - OKFHMN_08030 0.85 +0.5 1,467,856 + cueR OKFHMN_08035 0.26 -1.4 1,468,098 + cueR OKFHMN_08035 0.86 +0.2 1,468,178 + -0.0 1,468,317 - emrA OKFHMN_08040 0.14 -0.1 1,468,329 - emrA OKFHMN_08040 0.15 +0.5 1,468,329 - emrA OKFHMN_08040 0.15 -1.3 1,468,332 - emrA OKFHMN_08040 0.15 +0.5 1,468,372 + emrA OKFHMN_08040 0.19 +0.3 1,468,403 + emrA OKFHMN_08040 0.21 +0.5 1,468,404 - emrA OKFHMN_08040 0.21 +0.9 1,468,413 - emrA OKFHMN_08040 0.22 +0.6 1,468,706 + emrA OKFHMN_08040 0.47 -0.2 1,468,709 + emrA OKFHMN_08040 0.47 +0.7 1,468,772 - emrA OKFHMN_08040 0.53 +0.6 1,468,772 - emrA OKFHMN_08040 0.53 -1.9 1,468,772 - emrA OKFHMN_08040 0.53 +1.7 1,468,899 - emrA OKFHMN_08040 0.63 +0.1 1,469,307 + +0.6 1,469,308 - -0.8 1,469,308 - +0.5 1,469,309 + -0.9 1,469,310 - -0.1 1,469,310 - +0.3 1,469,310 - -0.3 1,469,342 + +0.1 1,469,448 + -1.0 1,469,540 - -0.2 1,470,043 + sunT OKFHMN_08045 0.33 +0.7 1,470,044 - sunT OKFHMN_08045 0.33 +0.9 1,470,067 + sunT OKFHMN_08045 0.34 +0.4 1,470,068 - sunT OKFHMN_08045 0.34 +0.6 1,470,089 + sunT OKFHMN_08045 0.35 +0.4 1,470,090 - sunT OKFHMN_08045 0.35 -0.4 1,470,090 - sunT OKFHMN_08045 0.35 +0.2 1,470,160 - sunT OKFHMN_08045 0.39 -0.5
Or see this region's nucleotide sequence