Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pAAR and OKFHMN_07730 are separated by 17 nucleotides OKFHMN_07730 and rhsA are separated by 168 nucleotides rhsA and OKFHMN_07740 are separated by 26 nucleotides OKFHMN_07740 and tnp-ISAs1 are separated by 214 nucleotides
OKFHMN_07725: pAAR - type IV secretion protein Rhs, at 1,400,324 to 1,405,174
pAAR
OKFHMN_07730: OKFHMN_07730 - hypothetical protein, at 1,405,192 to 1,405,599
_07730
OKFHMN_07735: rhsA - type IV secretion protein Rhs, at 1,405,768 to 1,407,102
rhsA
OKFHMN_07740: OKFHMN_07740 - Immunity protein of metallopeptidase 4 toxin, at 1,407,129 to 1,407,350
_07740
OKFHMN_07745: tnp-ISAs1 - ISAs1 family transposase, at 1,407,565 to 1,408,701
tnp-ISAs1
Position (kb) 1405
1406
1407
1408 Strain fitness (log2 ratio) -1
0
1 at 1404.870 kb on + strand at 1404.970 kb on + strand at 1405.635 kb on - strand at 1405.822 kb on + strand at 1405.939 kb on + strand, within rhsA at 1406.608 kb on + strand, within rhsA at 1406.686 kb on - strand, within rhsA at 1406.891 kb on + strand, within rhsA at 1407.702 kb on + strand, within tnp-ISAs1
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,404,870 + +0.3 1,404,970 + +1.1 1,405,635 - +0.5 1,405,822 + +0.4 1,405,939 + rhsA OKFHMN_07735 0.13 +1.3 1,406,608 + rhsA OKFHMN_07735 0.63 +0.1 1,406,686 - rhsA OKFHMN_07735 0.69 -1.3 1,406,891 + rhsA OKFHMN_07735 0.84 -0.8 1,407,702 + tnp-ISAs1 OKFHMN_07745 0.12 +0.3
Or see this region's nucleotide sequence