Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07600

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfepD and fepG overlap by 4 nucleotidesfepG and fepC overlap by 4 nucleotidesfepC and fepE overlap by 4 nucleotides OKFHMN_07590: fepD - ferrienterobactin ABC transporter permease, at 1,369,457 to 1,370,461 fepD OKFHMN_07595: fepG - iron-enterobactin ABC transporter permease, at 1,370,458 to 1,371,450 fepG OKFHMN_07600: fepC - ferrienterobactin ABC transporter ATPase, at 1,371,447 to 1,372,262 fepC OKFHMN_07605: fepE - LPS O-antigen length regulator, at 1,372,259 to 1,373,392 fepE Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -2 -1 0 1at 1370.464 kb on + strandat 1370.464 kb on + strandat 1370.573 kb on + strand, within fepGat 1370.607 kb on + strand, within fepGat 1370.712 kb on + strand, within fepGat 1370.901 kb on + strand, within fepGat 1370.904 kb on + strand, within fepGat 1370.940 kb on + strand, within fepGat 1371.057 kb on + strand, within fepGat 1371.409 kb on + strandat 1371.600 kb on - strand, within fepCat 1371.731 kb on + strand, within fepCat 1371.844 kb on + strand, within fepCat 1371.938 kb on + strand, within fepCat 1371.938 kb on + strand, within fepCat 1371.939 kb on - strand, within fepCat 1372.004 kb on - strand, within fepCat 1372.058 kb on + strand, within fepCat 1372.167 kb on + strand, within fepCat 1372.261 kb on - strandat 1372.261 kb on - strandat 1372.265 kb on + strandat 1372.319 kb on + strandat 1372.320 kb on - strandat 1372.320 kb on - strandat 1372.320 kb on - strandat 1372.328 kb on - strandat 1372.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,370,464 + +0.5
1,370,464 + -2.4
1,370,573 + fepG OKFHMN_07595 0.12 -2.0
1,370,607 + fepG OKFHMN_07595 0.15 -2.1
1,370,712 + fepG OKFHMN_07595 0.26 +0.2
1,370,901 + fepG OKFHMN_07595 0.45 -1.2
1,370,904 + fepG OKFHMN_07595 0.45 -2.4
1,370,940 + fepG OKFHMN_07595 0.49 -0.6
1,371,057 + fepG OKFHMN_07595 0.60 -0.7
1,371,409 + +1.1
1,371,600 - fepC OKFHMN_07600 0.19 -1.1
1,371,731 + fepC OKFHMN_07600 0.35 -0.4
1,371,844 + fepC OKFHMN_07600 0.49 +0.1
1,371,938 + fepC OKFHMN_07600 0.60 -2.3
1,371,938 + fepC OKFHMN_07600 0.60 -1.4
1,371,939 - fepC OKFHMN_07600 0.60 -1.1
1,372,004 - fepC OKFHMN_07600 0.68 -2.1
1,372,058 + fepC OKFHMN_07600 0.75 -1.1
1,372,167 + fepC OKFHMN_07600 0.88 -0.6
1,372,261 - -0.7
1,372,261 - -1.3
1,372,265 + +0.1
1,372,319 + -0.0
1,372,320 - +0.3
1,372,320 - -0.1
1,372,320 - -0.8
1,372,328 - +1.6
1,372,372 + +0.2

Or see this region's nucleotide sequence