Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06920

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucC and odhB are separated by 93 nucleotidesodhB and sucA are separated by 14 nucleotides OKFHMN_06915: sucC - ADP-forming succinate--CoA ligase subunit beta, at 1,232,660 to 1,233,826 sucC OKFHMN_06920: odhB - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,233,920 to 1,235,137 odhB OKFHMN_06925: sucA - 2-oxoglutarate dehydrogenase E1 component, at 1,235,152 to 1,237,953 sucA Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1at 1233.014 kb on - strand, within sucCat 1233.043 kb on + strand, within sucCat 1233.752 kb on - strandat 1233.819 kb on - strandat 1233.869 kb on - strandat 1233.922 kb on - strandat 1234.136 kb on - strand, within odhBat 1234.426 kb on - strand, within odhBat 1234.436 kb on - strand, within odhBat 1234.943 kb on - strand, within odhBat 1234.992 kb on - strand, within odhBat 1235.143 kb on - strandat 1235.395 kb on - strandat 1235.705 kb on - strand, within sucAat 1235.949 kb on - strand, within sucA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,233,014 - sucC OKFHMN_06915 0.30 -2.0
1,233,043 + sucC OKFHMN_06915 0.33 +0.0
1,233,752 - -2.9
1,233,819 - -1.9
1,233,869 - +0.2
1,233,922 - +1.1
1,234,136 - odhB OKFHMN_06920 0.18 -0.7
1,234,426 - odhB OKFHMN_06920 0.42 -1.4
1,234,436 - odhB OKFHMN_06920 0.42 -2.6
1,234,943 - odhB OKFHMN_06920 0.84 -1.9
1,234,992 - odhB OKFHMN_06920 0.88 -2.3
1,235,143 - -2.9
1,235,395 - -2.8
1,235,705 - sucA OKFHMN_06925 0.20 -0.7
1,235,949 - sucA OKFHMN_06925 0.28 -2.5

Or see this region's nucleotide sequence