Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06910

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlysR and sucD are separated by 666 nucleotidessucD and sucC overlap by 1 nucleotides OKFHMN_06905: lysR - LysR family transcriptional regulator, at 1,230,219 to 1,231,124 lysR OKFHMN_06910: sucD - succinate--CoA ligase subunit alpha, at 1,231,791 to 1,232,660 sucD OKFHMN_06915: sucC - ADP-forming succinate--CoA ligase subunit beta, at 1,232,660 to 1,233,826 sucC Position (kb) 1231 1232 1233Strain fitness (log2 ratio) -2 -1 0 1at 1231.003 kb on - strand, within lysRat 1231.003 kb on - strand, within lysRat 1231.593 kb on + strandat 1231.706 kb on + strandat 1231.707 kb on - strandat 1231.783 kb on - strandat 1231.783 kb on - strandat 1232.175 kb on - strand, within sucDat 1232.186 kb on - strand, within sucDat 1232.382 kb on - strand, within sucDat 1232.447 kb on - strand, within sucDat 1232.662 kb on - strandat 1232.726 kb on - strandat 1233.014 kb on - strand, within sucCat 1233.043 kb on + strand, within sucC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,231,003 - lysR OKFHMN_06905 0.87 -1.5
1,231,003 - lysR OKFHMN_06905 0.87 +0.7
1,231,593 + +0.4
1,231,706 + -0.4
1,231,707 - -0.4
1,231,783 - +0.8
1,231,783 - +0.0
1,232,175 - sucD OKFHMN_06910 0.44 -0.7
1,232,186 - sucD OKFHMN_06910 0.45 -0.5
1,232,382 - sucD OKFHMN_06910 0.68 -0.6
1,232,447 - sucD OKFHMN_06910 0.75 -0.7
1,232,662 - -0.7
1,232,726 - +1.0
1,233,014 - sucC OKFHMN_06915 0.30 -2.0
1,233,043 + sucC OKFHMN_06915 0.33 +0.0

Or see this region's nucleotide sequence