Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Lys_trna and cpoB are separated by 164 nucleotides cpoB and pal are separated by 9 nucleotides pal and tolB are separated by 34 nucleotides
OKFHMN_06790: Lys_trna - tRNA-Lys(ttt), at 1,208,220 to 1,208,295
_trna
OKFHMN_06795: cpoB - cell division protein CpoB, at 1,208,460 to 1,209,251
cpoB
OKFHMN_06800: pal - peptidoglycan-associated lipoprotein Pal, at 1,209,261 to 1,209,782
pal
OKFHMN_06805: tolB - Tol-Pal system protein TolB, at 1,209,817 to 1,211,109
tolB
Position (kb) 1209
1210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1208.388 kb on + strand at 1208.389 kb on - strand at 1208.461 kb on + strand at 1208.513 kb on - strand at 1208.534 kb on - strand at 1208.536 kb on - strand at 1208.648 kb on - strand, within cpoB at 1208.702 kb on - strand, within cpoB at 1208.702 kb on - strand, within cpoB at 1208.702 kb on - strand, within cpoB at 1208.786 kb on + strand, within cpoB at 1208.804 kb on + strand, within cpoB at 1209.104 kb on + strand, within cpoB at 1209.104 kb on + strand, within cpoB at 1209.265 kb on + strand at 1209.434 kb on - strand, within pal at 1209.434 kb on - strand, within pal at 1209.444 kb on - strand, within pal at 1209.469 kb on - strand, within pal at 1209.469 kb on - strand, within pal at 1209.469 kb on - strand, within pal at 1209.825 kb on - strand at 1209.939 kb on - strand at 1209.944 kb on - strand at 1210.069 kb on + strand, within tolB at 1210.131 kb on + strand, within tolB at 1210.131 kb on + strand, within tolB at 1210.131 kb on + strand, within tolB at 1210.132 kb on - strand, within tolB at 1210.132 kb on - strand, within tolB at 1210.155 kb on + strand, within tolB at 1210.156 kb on - strand, within tolB at 1210.164 kb on + strand, within tolB at 1210.299 kb on - strand, within tolB at 1210.463 kb on + strand, within tolB at 1210.464 kb on - strand, within tolB at 1210.473 kb on + strand, within tolB at 1210.542 kb on - strand, within tolB at 1210.605 kb on - strand, within tolB at 1210.605 kb on - strand, within tolB at 1210.632 kb on + strand, within tolB at 1210.727 kb on - strand, within tolB at 1210.763 kb on + strand, within tolB at 1210.776 kb on - strand, within tolB at 1210.776 kb on - strand, within tolB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,208,388 + +0.7 1,208,389 - +0.3 1,208,461 + +0.1 1,208,513 - +0.6 1,208,534 - -0.5 1,208,536 - +0.2 1,208,648 - cpoB OKFHMN_06795 0.24 +0.5 1,208,702 - cpoB OKFHMN_06795 0.31 -0.4 1,208,702 - cpoB OKFHMN_06795 0.31 +0.2 1,208,702 - cpoB OKFHMN_06795 0.31 -0.3 1,208,786 + cpoB OKFHMN_06795 0.41 +0.1 1,208,804 + cpoB OKFHMN_06795 0.43 +2.5 1,209,104 + cpoB OKFHMN_06795 0.81 +0.2 1,209,104 + cpoB OKFHMN_06795 0.81 +2.1 1,209,265 + +0.2 1,209,434 - pal OKFHMN_06800 0.33 +0.6 1,209,434 - pal OKFHMN_06800 0.33 -1.3 1,209,444 - pal OKFHMN_06800 0.35 -3.5 1,209,469 - pal OKFHMN_06800 0.40 -0.3 1,209,469 - pal OKFHMN_06800 0.40 -0.2 1,209,469 - pal OKFHMN_06800 0.40 -2.6 1,209,825 - -0.5 1,209,939 - +0.3 1,209,944 - -1.5 1,210,069 + tolB OKFHMN_06805 0.19 -1.7 1,210,131 + tolB OKFHMN_06805 0.24 -0.9 1,210,131 + tolB OKFHMN_06805 0.24 -1.4 1,210,131 + tolB OKFHMN_06805 0.24 -3.2 1,210,132 - tolB OKFHMN_06805 0.24 -0.9 1,210,132 - tolB OKFHMN_06805 0.24 -1.2 1,210,155 + tolB OKFHMN_06805 0.26 -2.6 1,210,156 - tolB OKFHMN_06805 0.26 -2.3 1,210,164 + tolB OKFHMN_06805 0.27 -0.7 1,210,299 - tolB OKFHMN_06805 0.37 +1.1 1,210,463 + tolB OKFHMN_06805 0.50 -0.7 1,210,464 - tolB OKFHMN_06805 0.50 -0.3 1,210,473 + tolB OKFHMN_06805 0.51 -3.2 1,210,542 - tolB OKFHMN_06805 0.56 -0.9 1,210,605 - tolB OKFHMN_06805 0.61 -0.5 1,210,605 - tolB OKFHMN_06805 0.61 -0.9 1,210,632 + tolB OKFHMN_06805 0.63 -0.0 1,210,727 - tolB OKFHMN_06805 0.70 -3.0 1,210,763 + tolB OKFHMN_06805 0.73 -0.5 1,210,776 - tolB OKFHMN_06805 0.74 -3.0 1,210,776 - tolB OKFHMN_06805 0.74 -0.2
Or see this region's nucleotide sequence