Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06735

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalM and gpmA are separated by 201 nucleotidesgpmA and aroG are separated by 165 nucleotides OKFHMN_06730: galM - galactose-1-epimerase, at 1,200,565 to 1,201,605 galM OKFHMN_06735: gpmA - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 1,201,807 to 1,202,559 gpmA OKFHMN_06740: aroG - 3-deoxy-7-phosphoheptulonate synthase AroG, at 1,202,725 to 1,203,777 aroG Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1at 1200.810 kb on + strand, within galMat 1200.810 kb on + strand, within galMat 1201.039 kb on - strand, within galMat 1201.042 kb on + strand, within galMat 1201.388 kb on - strand, within galMat 1201.593 kb on + strandat 1201.669 kb on - strandat 1201.682 kb on + strandat 1201.710 kb on + strandat 1201.719 kb on + strandat 1201.732 kb on - strandat 1201.800 kb on + strandat 1201.801 kb on - strandat 1201.804 kb on + strandat 1201.804 kb on + strandat 1201.805 kb on - strandat 1201.818 kb on + strandat 1201.818 kb on + strandat 1201.911 kb on - strand, within gpmAat 1202.080 kb on + strand, within gpmAat 1202.369 kb on + strand, within gpmAat 1202.394 kb on + strand, within gpmAat 1202.427 kb on + strand, within gpmAat 1202.673 kb on + strandat 1202.720 kb on - strandat 1202.764 kb on + strandat 1202.815 kb on - strandat 1203.057 kb on - strand, within aroGat 1203.061 kb on - strand, within aroGat 1203.478 kb on - strand, within aroG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,200,810 + galM OKFHMN_06730 0.24 +0.3
1,200,810 + galM OKFHMN_06730 0.24 +0.0
1,201,039 - galM OKFHMN_06730 0.46 +0.5
1,201,042 + galM OKFHMN_06730 0.46 +0.6
1,201,388 - galM OKFHMN_06730 0.79 +0.9
1,201,593 + -0.1
1,201,669 - -0.1
1,201,682 + -0.5
1,201,710 + +0.5
1,201,719 + -0.8
1,201,732 - +0.2
1,201,800 + -0.6
1,201,801 - -0.7
1,201,804 + +0.2
1,201,804 + -1.0
1,201,805 - -1.2
1,201,818 + -1.2
1,201,818 + -1.5
1,201,911 - gpmA OKFHMN_06735 0.14 +0.3
1,202,080 + gpmA OKFHMN_06735 0.36 -1.1
1,202,369 + gpmA OKFHMN_06735 0.75 -2.6
1,202,394 + gpmA OKFHMN_06735 0.78 -0.3
1,202,427 + gpmA OKFHMN_06735 0.82 -1.7
1,202,673 + +0.7
1,202,720 - -0.1
1,202,764 + -1.2
1,202,815 - -0.7
1,203,057 - aroG OKFHMN_06740 0.32 +0.3
1,203,061 - aroG OKFHMN_06740 0.32 +0.6
1,203,478 - aroG OKFHMN_06740 0.72 +0.9

Or see this region's nucleotide sequence