Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhJ and ybhI are separated by 182 nucleotides ybhI and ybhH are separated by 75 nucleotides
OKFHMN_06655: ybhJ - hydratase, at 1,183,637 to 1,185,898
ybhJ
OKFHMN_06660: ybhI - Inner membrane protein YbhI, at 1,186,081 to 1,187,514
ybhI
OKFHMN_06665: ybhH - 4-oxalomesaconate tautomerase, at 1,187,590 to 1,188,642
ybhH
Position (kb)
1186
1187
1188 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1185.082 kb on - strand, within ybhJ at 1185.116 kb on - strand, within ybhJ at 1185.150 kb on - strand, within ybhJ at 1185.150 kb on - strand, within ybhJ at 1185.309 kb on + strand, within ybhJ at 1185.499 kb on + strand, within ybhJ at 1185.501 kb on + strand, within ybhJ at 1185.502 kb on - strand, within ybhJ at 1185.743 kb on - strand at 1185.760 kb on + strand at 1186.108 kb on - strand at 1186.135 kb on - strand at 1186.150 kb on + strand at 1186.198 kb on - strand at 1186.245 kb on + strand, within ybhI at 1186.355 kb on + strand, within ybhI at 1186.356 kb on - strand, within ybhI at 1186.784 kb on + strand, within ybhI at 1186.784 kb on + strand, within ybhI at 1186.785 kb on - strand, within ybhI at 1186.794 kb on - strand, within ybhI at 1186.821 kb on + strand, within ybhI at 1186.938 kb on + strand, within ybhI at 1186.940 kb on + strand, within ybhI at 1186.941 kb on - strand, within ybhI at 1186.941 kb on - strand, within ybhI at 1187.187 kb on + strand, within ybhI at 1187.348 kb on - strand, within ybhI at 1187.509 kb on - strand at 1187.763 kb on + strand, within ybhH at 1188.261 kb on + strand, within ybhH at 1188.268 kb on - strand, within ybhH at 1188.283 kb on - strand, within ybhH at 1188.295 kb on - strand, within ybhH at 1188.358 kb on - strand, within ybhH at 1188.358 kb on - strand, within ybhH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,185,082 - ybhJ OKFHMN_06655 0.64 +2.1 1,185,116 - ybhJ OKFHMN_06655 0.65 +0.2 1,185,150 - ybhJ OKFHMN_06655 0.67 -0.3 1,185,150 - ybhJ OKFHMN_06655 0.67 +0.0 1,185,309 + ybhJ OKFHMN_06655 0.74 +0.7 1,185,499 + ybhJ OKFHMN_06655 0.82 +1.5 1,185,501 + ybhJ OKFHMN_06655 0.82 -2.1 1,185,502 - ybhJ OKFHMN_06655 0.82 +0.4 1,185,743 - +0.2 1,185,760 + +0.6 1,186,108 - +0.9 1,186,135 - +0.0 1,186,150 + -0.5 1,186,198 - -0.7 1,186,245 + ybhI OKFHMN_06660 0.11 -0.1 1,186,355 + ybhI OKFHMN_06660 0.19 +1.0 1,186,356 - ybhI OKFHMN_06660 0.19 -0.1 1,186,784 + ybhI OKFHMN_06660 0.49 +0.7 1,186,784 + ybhI OKFHMN_06660 0.49 +0.6 1,186,785 - ybhI OKFHMN_06660 0.49 +0.7 1,186,794 - ybhI OKFHMN_06660 0.50 +0.3 1,186,821 + ybhI OKFHMN_06660 0.52 -0.2 1,186,938 + ybhI OKFHMN_06660 0.60 -0.4 1,186,940 + ybhI OKFHMN_06660 0.60 -0.2 1,186,941 - ybhI OKFHMN_06660 0.60 +0.8 1,186,941 - ybhI OKFHMN_06660 0.60 +0.3 1,187,187 + ybhI OKFHMN_06660 0.77 +0.1 1,187,348 - ybhI OKFHMN_06660 0.88 -3.0 1,187,509 - -0.1 1,187,763 + ybhH OKFHMN_06665 0.16 +1.0 1,188,261 + ybhH OKFHMN_06665 0.64 +1.3 1,188,268 - ybhH OKFHMN_06665 0.64 +0.4 1,188,283 - ybhH OKFHMN_06665 0.66 +0.9 1,188,295 - ybhH OKFHMN_06665 0.67 -1.5 1,188,358 - ybhH OKFHMN_06665 0.73 +0.5 1,188,358 - ybhH OKFHMN_06665 0.73 -1.1
Or see this region's nucleotide sequence