Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06660

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybhJ and ybhI are separated by 182 nucleotidesybhI and ybhH are separated by 75 nucleotides OKFHMN_06655: ybhJ - hydratase, at 1,183,637 to 1,185,898 ybhJ OKFHMN_06660: ybhI - Inner membrane protein YbhI, at 1,186,081 to 1,187,514 ybhI OKFHMN_06665: ybhH - 4-oxalomesaconate tautomerase, at 1,187,590 to 1,188,642 ybhH Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.082 kb on - strand, within ybhJat 1185.116 kb on - strand, within ybhJat 1185.150 kb on - strand, within ybhJat 1185.150 kb on - strand, within ybhJat 1185.309 kb on + strand, within ybhJat 1185.499 kb on + strand, within ybhJat 1185.501 kb on + strand, within ybhJat 1185.502 kb on - strand, within ybhJat 1185.743 kb on - strandat 1185.760 kb on + strandat 1186.108 kb on - strandat 1186.135 kb on - strandat 1186.150 kb on + strandat 1186.198 kb on - strandat 1186.245 kb on + strand, within ybhIat 1186.355 kb on + strand, within ybhIat 1186.356 kb on - strand, within ybhIat 1186.784 kb on + strand, within ybhIat 1186.784 kb on + strand, within ybhIat 1186.785 kb on - strand, within ybhIat 1186.794 kb on - strand, within ybhIat 1186.821 kb on + strand, within ybhIat 1186.938 kb on + strand, within ybhIat 1186.940 kb on + strand, within ybhIat 1186.941 kb on - strand, within ybhIat 1186.941 kb on - strand, within ybhIat 1187.187 kb on + strand, within ybhIat 1187.348 kb on - strand, within ybhIat 1187.509 kb on - strandat 1187.763 kb on + strand, within ybhHat 1188.261 kb on + strand, within ybhHat 1188.268 kb on - strand, within ybhHat 1188.283 kb on - strand, within ybhHat 1188.295 kb on - strand, within ybhHat 1188.358 kb on - strand, within ybhHat 1188.358 kb on - strand, within ybhH

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,185,082 - ybhJ OKFHMN_06655 0.64 +2.1
1,185,116 - ybhJ OKFHMN_06655 0.65 +0.2
1,185,150 - ybhJ OKFHMN_06655 0.67 -0.3
1,185,150 - ybhJ OKFHMN_06655 0.67 +0.0
1,185,309 + ybhJ OKFHMN_06655 0.74 +0.7
1,185,499 + ybhJ OKFHMN_06655 0.82 +1.5
1,185,501 + ybhJ OKFHMN_06655 0.82 -2.1
1,185,502 - ybhJ OKFHMN_06655 0.82 +0.4
1,185,743 - +0.2
1,185,760 + +0.6
1,186,108 - +0.9
1,186,135 - +0.0
1,186,150 + -0.5
1,186,198 - -0.7
1,186,245 + ybhI OKFHMN_06660 0.11 -0.1
1,186,355 + ybhI OKFHMN_06660 0.19 +1.0
1,186,356 - ybhI OKFHMN_06660 0.19 -0.1
1,186,784 + ybhI OKFHMN_06660 0.49 +0.7
1,186,784 + ybhI OKFHMN_06660 0.49 +0.6
1,186,785 - ybhI OKFHMN_06660 0.49 +0.7
1,186,794 - ybhI OKFHMN_06660 0.50 +0.3
1,186,821 + ybhI OKFHMN_06660 0.52 -0.2
1,186,938 + ybhI OKFHMN_06660 0.60 -0.4
1,186,940 + ybhI OKFHMN_06660 0.60 -0.2
1,186,941 - ybhI OKFHMN_06660 0.60 +0.8
1,186,941 - ybhI OKFHMN_06660 0.60 +0.3
1,187,187 + ybhI OKFHMN_06660 0.77 +0.1
1,187,348 - ybhI OKFHMN_06660 0.88 -3.0
1,187,509 - -0.1
1,187,763 + ybhH OKFHMN_06665 0.16 +1.0
1,188,261 + ybhH OKFHMN_06665 0.64 +1.3
1,188,268 - ybhH OKFHMN_06665 0.64 +0.4
1,188,283 - ybhH OKFHMN_06665 0.66 +0.9
1,188,295 - ybhH OKFHMN_06665 0.67 -1.5
1,188,358 - ybhH OKFHMN_06665 0.73 +0.5
1,188,358 - ybhH OKFHMN_06665 0.73 -1.1

Or see this region's nucleotide sequence