Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05650

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeS and OKFHMN_05645 are separated by 15 nucleotidesOKFHMN_05645 and OKFHMN_05650 are separated by 91 nucleotidesOKFHMN_05650 and rssA are separated by 339 nucleotides OKFHMN_05640: yeeS - UPF0758 protein YeeS, at 962,229 to 962,705 yeeS OKFHMN_05645: OKFHMN_05645 - restriction endonuclease, at 962,721 to 963,206 _05645 OKFHMN_05650: OKFHMN_05650 - DUF945 domain-containing protein, at 963,298 to 964,116 _05650 OKFHMN_05655: rssA - phospholipase, at 964,456 to 965,526 rssA Position (kb) 963 964 965Strain fitness (log2 ratio) -1 0 1at 962.337 kb on - strand, within yeeSat 962.806 kb on + strand, within OKFHMN_05645at 963.097 kb on - strand, within OKFHMN_05645at 963.188 kb on + strandat 963.258 kb on + strandat 963.358 kb on - strandat 963.659 kb on + strand, within OKFHMN_05650at 963.659 kb on + strand, within OKFHMN_05650at 963.660 kb on - strand, within OKFHMN_05650at 963.660 kb on - strand, within OKFHMN_05650

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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962,337 - yeeS OKFHMN_05640 0.23 -0.4
962,806 + OKFHMN_05645 0.17 -0.8
963,097 - OKFHMN_05645 0.77 +0.2
963,188 + -0.6
963,258 + +0.1
963,358 - -1.0
963,659 + OKFHMN_05650 0.44 +0.1
963,659 + OKFHMN_05650 0.44 +0.2
963,660 - OKFHMN_05650 0.44 +1.1
963,660 - OKFHMN_05650 0.44 +0.1

Or see this region's nucleotide sequence