Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05575

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsK and lrp are separated by 134 nucleotideslrp and trxB are separated by 544 nucleotides OKFHMN_05570: ftsK - DNA translocase FtsK, at 947,839 to 951,867 ftsK OKFHMN_05575: lrp - leucine-responsive transcriptional regulator Lrp, at 952,002 to 952,496 lrp OKFHMN_05580: trxB - thioredoxin-disulfide reductase, at 953,041 to 954,006 trxB Position (kb) 952 953Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 951.923 kb on - strandat 951.957 kb on - strandat 952.049 kb on + strandat 952.057 kb on + strand, within lrpat 952.058 kb on - strand, within lrpat 952.113 kb on - strand, within lrpat 952.154 kb on - strand, within lrpat 952.171 kb on - strand, within lrpat 952.174 kb on - strand, within lrpat 952.407 kb on - strand, within lrpat 952.413 kb on - strand, within lrpat 952.437 kb on - strand, within lrpat 952.492 kb on - strandat 952.650 kb on + strandat 952.651 kb on - strandat 952.714 kb on + strandat 952.739 kb on - strandat 952.740 kb on + strandat 952.820 kb on - strandat 952.865 kb on - strandat 952.874 kb on - strandat 952.876 kb on - strandat 952.894 kb on - strandat 952.905 kb on + strandat 952.906 kb on - strandat 953.292 kb on + strand, within trxB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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951,923 - -0.0
951,957 - +0.3
952,049 + -1.8
952,057 + lrp OKFHMN_05575 0.11 -0.6
952,058 - lrp OKFHMN_05575 0.11 -3.2
952,113 - lrp OKFHMN_05575 0.22 -1.1
952,154 - lrp OKFHMN_05575 0.31 -2.4
952,171 - lrp OKFHMN_05575 0.34 -5.3
952,174 - lrp OKFHMN_05575 0.35 -3.6
952,407 - lrp OKFHMN_05575 0.82 -1.8
952,413 - lrp OKFHMN_05575 0.83 -1.8
952,437 - lrp OKFHMN_05575 0.88 -0.0
952,492 - -0.8
952,650 + -1.6
952,651 - -0.7
952,714 + -1.9
952,739 - -1.5
952,740 + -0.8
952,820 - -0.3
952,865 - +0.7
952,874 - -0.7
952,876 - +0.2
952,894 - -0.7
952,905 + +0.3
952,906 - -2.1
953,292 + trxB OKFHMN_05580 0.26 +0.6

Or see this region's nucleotide sequence