Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sulA and ompA are separated by 356 nucleotides ompA and matP are separated by 75 nucleotides matP and ycbZ are separated by 185 nucleotides
OKFHMN_05230: sulA - cell division inhibitor SulA, at 865,778 to 866,287
sulA
OKFHMN_05235: ompA - outer membrane protein A, at 866,644 to 867,684
ompA
OKFHMN_05240: matP - macrodomain Ter protein MatP, at 867,760 to 868,212
matP
OKFHMN_05245: ycbZ - Putative Lon protease-like protein, at 868,398 to 870,158
ycbZ
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 865.778 kb on - strand at 865.781 kb on + strand at 865.782 kb on - strand at 865.923 kb on + strand, within sulA at 865.923 kb on + strand, within sulA at 865.924 kb on - strand, within sulA at 866.040 kb on + strand, within sulA at 866.111 kb on + strand, within sulA at 866.191 kb on + strand, within sulA at 866.207 kb on - strand, within sulA at 866.207 kb on - strand, within sulA at 866.430 kb on + strand at 866.431 kb on - strand at 866.435 kb on + strand at 866.455 kb on + strand at 866.479 kb on + strand at 866.491 kb on + strand at 866.492 kb on - strand at 866.492 kb on - strand at 866.505 kb on + strand at 866.528 kb on + strand at 866.539 kb on + strand at 866.616 kb on + strand at 866.739 kb on + strand at 866.758 kb on + strand, within ompA at 866.758 kb on + strand, within ompA at 866.920 kb on + strand, within ompA at 866.920 kb on + strand, within ompA at 867.008 kb on + strand, within ompA at 867.239 kb on + strand, within ompA at 867.239 kb on + strand, within ompA at 867.407 kb on + strand, within ompA at 867.448 kb on + strand, within ompA at 867.448 kb on + strand, within ompA at 867.682 kb on + strand at 867.682 kb on + strand at 868.052 kb on - strand, within matP at 868.052 kb on - strand, within matP at 868.121 kb on + strand, within matP at 868.406 kb on + strand at 868.450 kb on - strand at 868.509 kb on - strand at 868.571 kb on + strand at 868.572 kb on - strand at 868.572 kb on - strand at 868.671 kb on + strand, within ycbZ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 865,778 - -1.0 865,781 + +0.1 865,782 - -0.1 865,923 + sulA OKFHMN_05230 0.28 +0.7 865,923 + sulA OKFHMN_05230 0.28 -0.0 865,924 - sulA OKFHMN_05230 0.29 -0.1 866,040 + sulA OKFHMN_05230 0.51 +0.8 866,111 + sulA OKFHMN_05230 0.65 +2.3 866,191 + sulA OKFHMN_05230 0.81 -0.8 866,207 - sulA OKFHMN_05230 0.84 -1.2 866,207 - sulA OKFHMN_05230 0.84 -1.1 866,430 + -0.6 866,431 - -0.7 866,435 + +0.2 866,455 + +0.3 866,479 + -0.5 866,491 + -0.4 866,492 - -0.5 866,492 - -1.9 866,505 + -0.4 866,528 + -0.2 866,539 + -0.1 866,616 + -0.7 866,739 + -1.2 866,758 + ompA OKFHMN_05235 0.11 +0.6 866,758 + ompA OKFHMN_05235 0.11 -1.8 866,920 + ompA OKFHMN_05235 0.27 -1.2 866,920 + ompA OKFHMN_05235 0.27 -1.6 867,008 + ompA OKFHMN_05235 0.35 -1.2 867,239 + ompA OKFHMN_05235 0.57 -1.6 867,239 + ompA OKFHMN_05235 0.57 -2.5 867,407 + ompA OKFHMN_05235 0.73 +0.1 867,448 + ompA OKFHMN_05235 0.77 -1.2 867,448 + ompA OKFHMN_05235 0.77 -3.3 867,682 + -1.0 867,682 + +0.1 868,052 - matP OKFHMN_05240 0.64 -2.5 868,052 - matP OKFHMN_05240 0.64 -2.3 868,121 + matP OKFHMN_05240 0.80 -0.1 868,406 + -0.0 868,450 - +0.7 868,509 - +0.2 868,571 + +0.8 868,572 - -1.9 868,572 - -0.1 868,671 + ycbZ OKFHMN_05245 0.16 +0.8
Or see this region's nucleotide sequence