Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt helD and yccF are separated by 122 nucleotides yccF and yccS are separated by 9 nucleotides yccS and sxy overlap by 38 nucleotides sxy and sulA are separated by 218 nucleotides
OKFHMN_05210: helD - DNA helicase IV, at 860,172 to 862,226
helD
OKFHMN_05215: yccF - YccF domain-containing protein, at 862,349 to 862,795
yccF
OKFHMN_05220: yccS - Inner membrane protein YccS, at 862,805 to 864,967
yccS
OKFHMN_05225: sxy - CRP-S regulon transcriptional coactivator Sxy, at 864,930 to 865,559
sxy
OKFHMN_05230: sulA - cell division inhibitor SulA, at 865,778 to 866,287
sulA
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 862.178 kb on - strand at 862.448 kb on - strand, within yccF at 862.517 kb on - strand, within yccF at 862.517 kb on - strand, within yccF at 862.801 kb on + strand at 862.818 kb on + strand at 862.838 kb on + strand at 862.839 kb on - strand at 862.927 kb on - strand at 863.186 kb on + strand, within yccS at 863.186 kb on + strand, within yccS at 863.187 kb on - strand, within yccS at 863.211 kb on - strand, within yccS at 863.279 kb on - strand, within yccS at 863.333 kb on + strand, within yccS at 863.333 kb on + strand, within yccS at 863.488 kb on - strand, within yccS at 863.535 kb on - strand, within yccS at 863.743 kb on + strand, within yccS at 863.743 kb on + strand, within yccS at 863.888 kb on - strand, within yccS at 864.107 kb on - strand, within yccS at 864.140 kb on - strand, within yccS at 864.140 kb on - strand, within yccS at 864.153 kb on + strand, within yccS at 864.153 kb on + strand, within yccS at 864.301 kb on - strand, within yccS at 864.342 kb on + strand, within yccS at 864.398 kb on + strand, within yccS at 864.399 kb on - strand, within yccS at 864.399 kb on - strand, within yccS at 864.471 kb on - strand, within yccS at 864.495 kb on - strand, within yccS at 864.529 kb on + strand, within yccS at 864.530 kb on - strand, within yccS at 864.586 kb on + strand, within yccS at 864.587 kb on - strand, within yccS at 864.706 kb on + strand, within yccS at 864.707 kb on - strand, within yccS at 864.762 kb on + strand at 864.805 kb on - strand at 864.805 kb on - strand at 864.805 kb on - strand at 864.805 kb on - strand at 864.805 kb on - strand at 864.870 kb on + strand at 865.122 kb on + strand, within sxy at 865.123 kb on - strand, within sxy at 865.123 kb on - strand, within sxy at 865.123 kb on - strand, within sxy at 865.123 kb on - strand, within sxy at 865.259 kb on - strand, within sxy at 865.318 kb on + strand, within sxy at 865.319 kb on - strand, within sxy at 865.350 kb on - strand, within sxy at 865.350 kb on - strand, within sxy at 865.352 kb on - strand, within sxy at 865.468 kb on + strand, within sxy at 865.531 kb on + strand at 865.544 kb on - strand at 865.544 kb on - strand at 865.544 kb on - strand at 865.635 kb on + strand at 865.778 kb on - strand at 865.781 kb on + strand at 865.782 kb on - strand at 865.923 kb on + strand, within sulA at 865.923 kb on + strand, within sulA at 865.924 kb on - strand, within sulA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 862,178 - -2.7 862,448 - yccF OKFHMN_05215 0.22 +0.9 862,517 - yccF OKFHMN_05215 0.38 +1.3 862,517 - yccF OKFHMN_05215 0.38 -1.8 862,801 + -0.2 862,818 + -0.1 862,838 + +0.6 862,839 - -1.2 862,927 - -4.3 863,186 + yccS OKFHMN_05220 0.18 +0.3 863,186 + yccS OKFHMN_05220 0.18 -0.7 863,187 - yccS OKFHMN_05220 0.18 +0.9 863,211 - yccS OKFHMN_05220 0.19 +0.2 863,279 - yccS OKFHMN_05220 0.22 -0.6 863,333 + yccS OKFHMN_05220 0.24 -0.1 863,333 + yccS OKFHMN_05220 0.24 +0.6 863,488 - yccS OKFHMN_05220 0.32 -1.6 863,535 - yccS OKFHMN_05220 0.34 -1.1 863,743 + yccS OKFHMN_05220 0.43 -0.9 863,743 + yccS OKFHMN_05220 0.43 -0.7 863,888 - yccS OKFHMN_05220 0.50 +0.3 864,107 - yccS OKFHMN_05220 0.60 +0.0 864,140 - yccS OKFHMN_05220 0.62 +0.4 864,140 - yccS OKFHMN_05220 0.62 +0.3 864,153 + yccS OKFHMN_05220 0.62 -0.3 864,153 + yccS OKFHMN_05220 0.62 -0.2 864,301 - yccS OKFHMN_05220 0.69 +1.4 864,342 + yccS OKFHMN_05220 0.71 -0.7 864,398 + yccS OKFHMN_05220 0.74 -0.8 864,399 - yccS OKFHMN_05220 0.74 +0.7 864,399 - yccS OKFHMN_05220 0.74 -0.2 864,471 - yccS OKFHMN_05220 0.77 +1.2 864,495 - yccS OKFHMN_05220 0.78 +0.6 864,529 + yccS OKFHMN_05220 0.80 +0.5 864,530 - yccS OKFHMN_05220 0.80 +0.2 864,586 + yccS OKFHMN_05220 0.82 -0.7 864,587 - yccS OKFHMN_05220 0.82 +0.8 864,706 + yccS OKFHMN_05220 0.88 -0.2 864,707 - yccS OKFHMN_05220 0.88 -0.6 864,762 + +0.4 864,805 - -0.9 864,805 - -1.2 864,805 - +0.7 864,805 - -0.9 864,805 - +0.3 864,870 + -2.2 865,122 + sxy OKFHMN_05225 0.30 +0.6 865,123 - sxy OKFHMN_05225 0.31 +0.2 865,123 - sxy OKFHMN_05225 0.31 +0.1 865,123 - sxy OKFHMN_05225 0.31 +2.4 865,123 - sxy OKFHMN_05225 0.31 +1.3 865,259 - sxy OKFHMN_05225 0.52 +0.2 865,318 + sxy OKFHMN_05225 0.62 -0.3 865,319 - sxy OKFHMN_05225 0.62 -1.3 865,350 - sxy OKFHMN_05225 0.67 +0.5 865,350 - sxy OKFHMN_05225 0.67 -0.8 865,352 - sxy OKFHMN_05225 0.67 +0.3 865,468 + sxy OKFHMN_05225 0.85 -0.0 865,531 + -0.7 865,544 - -0.1 865,544 - -0.2 865,544 - -1.0 865,635 + -1.0 865,778 - -1.0 865,781 + +0.1 865,782 - -0.1 865,923 + sulA OKFHMN_05230 0.28 +0.7 865,923 + sulA OKFHMN_05230 0.28 -0.0 865,924 - sulA OKFHMN_05230 0.29 -0.1
Or see this region's nucleotide sequence