Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hspQ and yccU are separated by 44 nucleotides yccU and yccT are separated by 172 nucleotides yccT and mgsA are separated by 95 nucleotides mgsA and helD are separated by 31 nucleotides
OKFHMN_05190: hspQ - heat shock protein HspQ, at 857,976 to 858,293
hspQ
OKFHMN_05195: yccU - Uncharacterized protein YccU, at 858,338 to 858,751
yccU
OKFHMN_05200: yccT - DUF2057 domain-containing protein, at 858,924 to 859,586
yccT
OKFHMN_05205: mgsA - methylglyoxal synthase, at 859,682 to 860,140
mgsA
OKFHMN_05210: helD - DNA helicase IV, at 860,172 to 862,226
helD
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.942 kb on + strand at 857.944 kb on + strand at 858.170 kb on + strand, within hspQ at 858.170 kb on + strand, within hspQ at 858.174 kb on + strand, within hspQ at 858.193 kb on + strand, within hspQ at 858.340 kb on - strand at 858.482 kb on - strand, within yccU at 858.648 kb on + strand, within yccU at 858.649 kb on - strand, within yccU at 858.723 kb on - strand at 858.843 kb on + strand at 858.844 kb on - strand at 858.849 kb on + strand at 858.849 kb on + strand at 858.849 kb on + strand at 858.850 kb on - strand at 858.852 kb on - strand at 858.860 kb on - strand at 858.919 kb on + strand at 859.152 kb on + strand, within yccT at 859.155 kb on - strand, within yccT at 859.353 kb on + strand, within yccT at 859.354 kb on - strand, within yccT at 859.375 kb on - strand, within yccT at 859.548 kb on - strand at 859.635 kb on + strand at 859.644 kb on - strand at 859.648 kb on + strand at 859.649 kb on - strand at 859.656 kb on - strand at 859.676 kb on + strand at 859.721 kb on - strand at 859.788 kb on + strand, within mgsA at 859.803 kb on + strand, within mgsA at 859.833 kb on + strand, within mgsA at 859.959 kb on + strand, within mgsA at 860.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 857,942 + -0.3 857,944 + +0.2 858,170 + hspQ OKFHMN_05190 0.61 +0.2 858,170 + hspQ OKFHMN_05190 0.61 -0.7 858,174 + hspQ OKFHMN_05190 0.62 +0.2 858,193 + hspQ OKFHMN_05190 0.68 +0.5 858,340 - -0.7 858,482 - yccU OKFHMN_05195 0.35 +0.0 858,648 + yccU OKFHMN_05195 0.75 +0.4 858,649 - yccU OKFHMN_05195 0.75 -0.0 858,723 - +0.6 858,843 + -3.4 858,844 - +0.5 858,849 + -2.5 858,849 + -0.1 858,849 + +0.4 858,850 - -0.4 858,852 - +0.5 858,860 - -2.4 858,919 + +0.4 859,152 + yccT OKFHMN_05200 0.34 +0.4 859,155 - yccT OKFHMN_05200 0.35 -0.3 859,353 + yccT OKFHMN_05200 0.65 -0.6 859,354 - yccT OKFHMN_05200 0.65 -0.0 859,375 - yccT OKFHMN_05200 0.68 -1.8 859,548 - -1.4 859,635 + +1.1 859,644 - +0.1 859,648 + +0.1 859,649 - +2.4 859,656 - +0.2 859,676 + -0.6 859,721 - -1.4 859,788 + mgsA OKFHMN_05205 0.23 +1.2 859,803 + mgsA OKFHMN_05205 0.26 +2.3 859,833 + mgsA OKFHMN_05205 0.33 +0.1 859,959 + mgsA OKFHMN_05205 0.60 -0.4 860,288 - +0.6
Or see this region's nucleotide sequence