Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ser_trna and yccA are separated by 206 nucleotides yccA and tusE are separated by 90 nucleotides tusE and yccX overlap by 4 nucleotides yccX and rlmI are separated by 109 nucleotides
OKFHMN_05165: Ser_trna - tRNA-Ser(tga), at 854,983 to 855,072
_trna
OKFHMN_05170: yccA - FtsH protease modulator YccA, at 855,279 to 855,938
yccA
OKFHMN_05175: tusE - sulfurtransferase TusE, at 856,029 to 856,358
tusE
OKFHMN_05180: yccX - acylphosphatase, at 856,355 to 856,633
yccX
OKFHMN_05185: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 856,743 to 857,918
rlmI
Position (kb) 856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 855.075 kb on + strand at 855.093 kb on - strand at 855.140 kb on - strand at 855.141 kb on + strand at 855.142 kb on - strand at 855.149 kb on + strand at 855.212 kb on - strand at 855.231 kb on + strand at 855.233 kb on + strand at 855.251 kb on - strand at 855.254 kb on + strand at 855.254 kb on + strand at 855.288 kb on - strand at 855.323 kb on + strand at 855.323 kb on + strand at 855.456 kb on + strand, within yccA at 855.540 kb on + strand, within yccA at 855.567 kb on + strand, within yccA at 855.873 kb on + strand at 856.013 kb on + strand at 856.024 kb on + strand at 856.356 kb on + strand at 856.357 kb on - strand at 856.460 kb on + strand, within yccX at 856.470 kb on - strand, within yccX at 856.561 kb on - strand, within yccX at 856.727 kb on + strand at 856.728 kb on - strand at 856.735 kb on + strand at 856.735 kb on + strand at 856.824 kb on - strand at 857.032 kb on - strand, within rlmI at 857.072 kb on + strand, within rlmI at 857.072 kb on + strand, within rlmI at 857.337 kb on + strand, within rlmI
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 855,075 + +0.8 855,093 - +1.4 855,140 - +0.8 855,141 + +0.7 855,142 - +0.7 855,149 + -1.2 855,212 - +0.7 855,231 + -0.8 855,233 + +0.2 855,251 - -0.6 855,254 + -1.6 855,254 + -0.0 855,288 - +1.9 855,323 + +0.9 855,323 + -0.1 855,456 + yccA OKFHMN_05170 0.27 -0.4 855,540 + yccA OKFHMN_05170 0.40 -0.9 855,567 + yccA OKFHMN_05170 0.44 +0.6 855,873 + -0.3 856,013 + -0.6 856,024 + -1.3 856,356 + -0.5 856,357 - +0.3 856,460 + yccX OKFHMN_05180 0.38 -0.3 856,470 - yccX OKFHMN_05180 0.41 -0.7 856,561 - yccX OKFHMN_05180 0.74 -0.4 856,727 + -3.1 856,728 - +0.5 856,735 + +1.2 856,735 + +1.0 856,824 - +0.3 857,032 - rlmI OKFHMN_05185 0.25 +0.1 857,072 + rlmI OKFHMN_05185 0.28 -0.9 857,072 + rlmI OKFHMN_05185 0.28 +0.4 857,337 + rlmI OKFHMN_05185 0.51 -0.1
Or see this region's nucleotide sequence