Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gfcE and etp overlap by 13 nucleotides etp and etk are separated by 19 nucleotides etk and appA are separated by 119 nucleotides
OKFHMN_04755: gfcE - Putative polysaccharide export protein GfcE, at 791,092 to 792,231
gfcE
OKFHMN_04760: etp - protein-tyrosine-phosphatase Etp, at 792,219 to 792,665
etp
OKFHMN_04765: etk - tyrosine-protein kinase, at 792,685 to 794,865
etk
OKFHMN_04770: appA - bifunctional acid phosphatase/4-phytase, at 794,985 to 796,289
appA
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -2
-1
0
1 at 791.952 kb on + strand, within gfcE at 792.033 kb on + strand, within gfcE at 792.319 kb on + strand, within etp at 792.319 kb on + strand, within etp at 792.319 kb on + strand, within etp at 792.428 kb on + strand, within etp at 792.681 kb on + strand at 792.784 kb on - strand at 792.836 kb on + strand at 792.861 kb on + strand at 792.861 kb on + strand at 793.110 kb on + strand, within etk at 793.173 kb on + strand, within etk at 793.207 kb on - strand, within etk at 793.260 kb on + strand, within etk at 793.260 kb on + strand, within etk at 793.854 kb on + strand, within etk at 794.042 kb on + strand, within etk at 794.277 kb on + strand, within etk at 794.375 kb on + strand, within etk at 794.379 kb on + strand, within etk at 794.379 kb on + strand, within etk at 794.379 kb on + strand, within etk at 794.430 kb on + strand, within etk at 794.521 kb on - strand, within etk at 794.821 kb on + strand at 794.829 kb on + strand at 794.834 kb on - strand at 794.844 kb on + strand at 794.844 kb on + strand at 794.844 kb on + strand at 794.848 kb on + strand at 794.875 kb on + strand at 794.987 kb on - strand at 794.987 kb on - strand at 795.303 kb on - strand, within appA at 795.340 kb on - strand, within appA at 795.352 kb on + strand, within appA at 795.448 kb on - strand, within appA at 795.842 kb on + strand, within appA at 795.843 kb on - strand, within appA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 791,952 + gfcE OKFHMN_04755 0.75 -0.2 792,033 + gfcE OKFHMN_04755 0.83 -0.9 792,319 + etp OKFHMN_04760 0.22 -0.7 792,319 + etp OKFHMN_04760 0.22 +0.2 792,319 + etp OKFHMN_04760 0.22 -0.6 792,428 + etp OKFHMN_04760 0.47 +0.2 792,681 + -0.6 792,784 - -0.0 792,836 + +0.4 792,861 + -0.2 792,861 + -0.2 793,110 + etk OKFHMN_04765 0.19 -0.9 793,173 + etk OKFHMN_04765 0.22 +0.7 793,207 - etk OKFHMN_04765 0.24 -0.7 793,260 + etk OKFHMN_04765 0.26 -0.2 793,260 + etk OKFHMN_04765 0.26 +1.3 793,854 + etk OKFHMN_04765 0.54 -0.1 794,042 + etk OKFHMN_04765 0.62 +0.4 794,277 + etk OKFHMN_04765 0.73 +0.1 794,375 + etk OKFHMN_04765 0.77 +0.3 794,379 + etk OKFHMN_04765 0.78 +0.3 794,379 + etk OKFHMN_04765 0.78 +0.5 794,379 + etk OKFHMN_04765 0.78 +0.0 794,430 + etk OKFHMN_04765 0.80 +0.2 794,521 - etk OKFHMN_04765 0.84 +0.1 794,821 + -0.9 794,829 + -0.1 794,834 - -2.7 794,844 + -0.2 794,844 + -1.9 794,844 + +0.8 794,848 + -0.0 794,875 + -0.8 794,987 - -0.1 794,987 - +0.3 795,303 - appA OKFHMN_04770 0.24 -1.1 795,340 - appA OKFHMN_04770 0.27 -2.5 795,352 + appA OKFHMN_04770 0.28 +0.3 795,448 - appA OKFHMN_04770 0.35 +0.8 795,842 + appA OKFHMN_04770 0.66 -0.3 795,843 - appA OKFHMN_04770 0.66 -0.2
Or see this region's nucleotide sequence