Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04730

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyccM and cspG are separated by 614 nucleotidescspG and OKFHMN_04735 are separated by 939 nucleotides OKFHMN_04725: yccM - Putative electron transport protein YccM, at 784,311 to 785,384 yccM OKFHMN_04730: cspG - cold shock protein CspG, at 785,999 to 786,211 cspG OKFHMN_04735: OKFHMN_04735 - Threonine-rich inner membrane protein GfcA, at 787,151 to 787,456 _04735 Position (kb) 785 786 787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 785.119 kb on + strand, within yccMat 785.165 kb on - strand, within yccMat 785.305 kb on - strandat 785.459 kb on - strandat 785.689 kb on + strandat 785.742 kb on + strandat 785.802 kb on - strandat 785.837 kb on - strandat 786.000 kb on + strandat 786.001 kb on - strandat 786.011 kb on + strandat 786.011 kb on + strandat 786.012 kb on - strandat 786.271 kb on - strandat 786.271 kb on - strandat 786.337 kb on - strandat 786.633 kb on + strandat 786.727 kb on - strandat 786.836 kb on - strandat 786.855 kb on + strandat 786.898 kb on + strandat 786.990 kb on + strandat 787.041 kb on + strandat 787.094 kb on + strandat 787.094 kb on + strandat 787.116 kb on + strandat 787.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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785,119 + yccM OKFHMN_04725 0.75 -0.9
785,165 - yccM OKFHMN_04725 0.80 -3.1
785,305 - +1.2
785,459 - -0.5
785,689 + -1.7
785,742 + +0.5
785,802 - -3.8
785,837 - +0.2
786,000 + -0.2
786,001 - +0.6
786,011 + -1.3
786,011 + -1.4
786,012 - +1.3
786,271 - +0.2
786,271 - -1.1
786,337 - -0.5
786,633 + +0.6
786,727 - +0.0
786,836 - +0.3
786,855 + -0.4
786,898 + -2.1
786,990 + -0.1
787,041 + +0.1
787,094 + -0.5
787,094 + +0.1
787,116 + +0.1
787,120 + +0.2

Or see this region's nucleotide sequence