Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04720

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttorT and torS are separated by 127 nucleotidestorS and yccM are separated by 71 nucleotides OKFHMN_04715: torT - TMAO reductase system periplasmic protein TorT, at 780,384 to 781,412 torT OKFHMN_04720: torS - TMAO reductase system sensor histidine kinase/response regulator TorS, at 781,540 to 784,239 torS OKFHMN_04725: yccM - Putative electron transport protein YccM, at 784,311 to 785,384 yccM Position (kb) 781 782 783 784 785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 780.810 kb on - strand, within torTat 781.218 kb on - strand, within torTat 781.222 kb on + strand, within torTat 781.222 kb on + strand, within torTat 781.481 kb on + strandat 781.481 kb on + strandat 781.564 kb on - strandat 781.618 kb on - strandat 781.635 kb on + strandat 782.015 kb on - strand, within torSat 782.089 kb on + strand, within torSat 782.302 kb on - strand, within torSat 782.496 kb on - strand, within torSat 782.777 kb on + strand, within torSat 782.950 kb on - strand, within torSat 783.249 kb on + strand, within torSat 783.249 kb on + strand, within torSat 783.256 kb on - strand, within torSat 783.912 kb on - strand, within torSat 784.444 kb on - strand, within yccMat 784.496 kb on + strand, within yccMat 784.497 kb on - strand, within yccMat 784.588 kb on + strand, within yccMat 784.781 kb on - strand, within yccMat 784.850 kb on + strand, within yccMat 784.907 kb on + strand, within yccMat 784.983 kb on + strand, within yccMat 785.119 kb on + strand, within yccMat 785.165 kb on - strand, within yccM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
780,810 - torT OKFHMN_04715 0.41 +0.2
781,218 - torT OKFHMN_04715 0.81 +0.1
781,222 + torT OKFHMN_04715 0.81 +0.6
781,222 + torT OKFHMN_04715 0.81 -0.1
781,481 + +0.1
781,481 + +0.6
781,564 - -0.2
781,618 - -1.2
781,635 + +0.3
782,015 - torS OKFHMN_04720 0.18 -0.2
782,089 + torS OKFHMN_04720 0.20 -2.1
782,302 - torS OKFHMN_04720 0.28 +0.7
782,496 - torS OKFHMN_04720 0.35 +2.3
782,777 + torS OKFHMN_04720 0.46 +0.6
782,950 - torS OKFHMN_04720 0.52 -0.9
783,249 + torS OKFHMN_04720 0.63 +0.3
783,249 + torS OKFHMN_04720 0.63 -0.6
783,256 - torS OKFHMN_04720 0.64 +0.4
783,912 - torS OKFHMN_04720 0.88 -0.1
784,444 - yccM OKFHMN_04725 0.12 +1.7
784,496 + yccM OKFHMN_04725 0.17 +0.6
784,497 - yccM OKFHMN_04725 0.17 -0.0
784,588 + yccM OKFHMN_04725 0.26 +1.0
784,781 - yccM OKFHMN_04725 0.44 +0.3
784,850 + yccM OKFHMN_04725 0.50 -1.1
784,907 + yccM OKFHMN_04725 0.55 -0.5
784,983 + yccM OKFHMN_04725 0.63 -0.3
785,119 + yccM OKFHMN_04725 0.75 -0.9
785,165 - yccM OKFHMN_04725 0.80 -3.1

Or see this region's nucleotide sequence