Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04685

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcbpA and cbpM overlap by 1 nucleotidescbpM and torD are separated by 153 nucleotidestorD and torA overlap by 4 nucleotides OKFHMN_04680: cbpA - curved DNA-binding protein, at 773,896 to 774,816 cbpA OKFHMN_04685: cbpM - chaperone modulator CbpM, at 774,816 to 775,121 cbpM OKFHMN_04695: torD - molecular chaperone TorD, at 775,275 to 775,874 torD OKFHMN_04700: torA - trimethylamine-N-oxide reductase TorA, at 775,871 to 778,417 torA Position (kb) 774 775 776Strain fitness (log2 ratio) -2 -1 0 1 2at 773.831 kb on + strandat 773.837 kb on + strandat 773.837 kb on + strandat 773.989 kb on + strand, within cbpAat 773.990 kb on - strand, within cbpAat 774.163 kb on - strand, within cbpAat 774.316 kb on + strand, within cbpAat 774.573 kb on + strand, within cbpAat 774.814 kb on + strandat 774.827 kb on + strandat 774.839 kb on + strandat 774.842 kb on + strandat 775.109 kb on - strandat 775.303 kb on - strandat 775.303 kb on - strandat 775.314 kb on + strandat 775.585 kb on + strand, within torDat 775.677 kb on + strand, within torDat 775.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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773,831 + +0.1
773,837 + -2.1
773,837 + +0.2
773,989 + cbpA OKFHMN_04680 0.10 -0.4
773,990 - cbpA OKFHMN_04680 0.10 +2.4
774,163 - cbpA OKFHMN_04680 0.29 +1.8
774,316 + cbpA OKFHMN_04680 0.46 -2.1
774,573 + cbpA OKFHMN_04680 0.74 +0.3
774,814 + +1.0
774,827 + +0.1
774,839 + +0.0
774,842 + -1.3
775,109 - -0.8
775,303 - +0.2
775,303 - +0.1
775,314 + +0.4
775,585 + torD OKFHMN_04695 0.52 -0.6
775,677 + torD OKFHMN_04695 0.67 +0.6
775,849 - +1.1

Or see this region's nucleotide sequence