Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04670

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntagp and OKFHMN_04670 are separated by 290 nucleotidesOKFHMN_04670 and OKFHMN_04675 are separated by 109 nucleotides OKFHMN_04665: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 770,847 to 772,088 agp OKFHMN_04670: OKFHMN_04670 - YccE, at 772,379 to 772,627 _04670 OKFHMN_04675: OKFHMN_04675 - YccE, at 772,737 to 773,636 _04675 Position (kb) 772 773Strain fitness (log2 ratio) -1 0 1 2 3at 771.393 kb on + strand, within agpat 771.446 kb on - strand, within agpat 771.519 kb on - strand, within agpat 771.521 kb on - strand, within agpat 771.547 kb on + strand, within agpat 771.690 kb on - strand, within agpat 771.761 kb on - strand, within agpat 771.801 kb on + strand, within agpat 771.835 kb on + strand, within agpat 771.848 kb on - strand, within agpat 771.848 kb on - strand, within agpat 772.190 kb on - strandat 773.324 kb on - strand, within OKFHMN_04675

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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771,393 + agp OKFHMN_04665 0.44 -1.6
771,446 - agp OKFHMN_04665 0.48 -0.1
771,519 - agp OKFHMN_04665 0.54 +0.4
771,521 - agp OKFHMN_04665 0.54 +0.0
771,547 + agp OKFHMN_04665 0.56 +1.0
771,690 - agp OKFHMN_04665 0.68 -0.3
771,761 - agp OKFHMN_04665 0.74 +0.6
771,801 + agp OKFHMN_04665 0.77 +2.8
771,835 + agp OKFHMN_04665 0.80 -0.2
771,848 - agp OKFHMN_04665 0.81 +0.6
771,848 - agp OKFHMN_04665 0.81 +1.1
772,190 - -0.1
773,324 - OKFHMN_04675 0.65 -0.0

Or see this region's nucleotide sequence