Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04470

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfabG and acpS2 are separated by 13 nucleotidesacpS2 and fhaC are separated by 15 nucleotidesfhaC and fhaB are separated by 88 nucleotides OKFHMN_04460: fabG - 3-oxoacyl-ACP reductase, at 722,121 to 722,882 fabG OKFHMN_04465: acpS2 - putative holo-[acyl-carrier-protein] synthase 2, at 722,896 to 723,264 acpS2 OKFHMN_04470: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 723,280 to 724,899 fhaC OKFHMN_04475: fhaB - hemagglutinin, at 724,988 to 728,800 fhaB Position (kb) 723 724 725Strain fitness (log2 ratio) -1 0 1at 724.187 kb on + strand, within fhaCat 724.188 kb on - strand, within fhaCat 724.525 kb on - strand, within fhaCat 724.990 kb on - strandat 725.003 kb on - strandat 725.005 kb on + strandat 725.140 kb on - strandat 725.243 kb on - strandat 725.439 kb on + strand, within fhaBat 725.439 kb on + strand, within fhaBat 725.589 kb on + strand, within fhaB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
724,187 + fhaC OKFHMN_04470 0.56 +0.9
724,188 - fhaC OKFHMN_04470 0.56 +0.7
724,525 - fhaC OKFHMN_04470 0.77 -0.6
724,990 - +0.2
725,003 - +0.1
725,005 + +0.6
725,140 - -0.1
725,243 - -1.6
725,439 + fhaB OKFHMN_04475 0.12 -0.9
725,439 + fhaB OKFHMN_04475 0.12 -0.5
725,589 + fhaB OKFHMN_04475 0.16 +0.6

Or see this region's nucleotide sequence