Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04450

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcvT and OKFHMN_04450 are separated by 35 nucleotidesOKFHMN_04450 and fabA are separated by 21 nucleotidesfabA and fabG are separated by 3 nucleotides OKFHMN_04445: gcvT - aminomethyltransferase, at 720,070 to 721,230 gcvT OKFHMN_04450: OKFHMN_04450 - acyl carrier protein, at 721,266 to 721,547 _04450 OKFHMN_04455: fabA - beta-hydroxyacyl-ACP dehydratase, at 721,569 to 722,117 fabA OKFHMN_04460: fabG - 3-oxoacyl-ACP reductase, at 722,121 to 722,882 fabG Position (kb) 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.392 kb on + strand, within gcvTat 720.393 kb on - strand, within gcvTat 720.645 kb on - strand, within gcvTat 720.651 kb on - strand, within gcvTat 720.696 kb on + strand, within gcvTat 720.945 kb on - strand, within gcvTat 720.990 kb on - strand, within gcvTat 721.081 kb on - strand, within gcvTat 721.179 kb on - strandat 721.320 kb on - strand, within OKFHMN_04450at 721.360 kb on - strand, within OKFHMN_04450at 721.434 kb on - strand, within OKFHMN_04450at 721.570 kb on + strandat 721.694 kb on + strand, within fabAat 721.923 kb on - strand, within fabAat 721.965 kb on + strand, within fabAat 721.969 kb on + strand, within fabAat 722.117 kb on + strandat 722.117 kb on + strandat 722.171 kb on - strandat 722.225 kb on + strand, within fabG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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720,392 + gcvT OKFHMN_04445 0.28 +0.2
720,393 - gcvT OKFHMN_04445 0.28 +0.4
720,645 - gcvT OKFHMN_04445 0.50 -0.1
720,651 - gcvT OKFHMN_04445 0.50 -1.3
720,696 + gcvT OKFHMN_04445 0.54 +0.3
720,945 - gcvT OKFHMN_04445 0.75 -0.5
720,990 - gcvT OKFHMN_04445 0.79 +1.1
721,081 - gcvT OKFHMN_04445 0.87 +0.4
721,179 - +0.4
721,320 - OKFHMN_04450 0.19 +0.3
721,360 - OKFHMN_04450 0.33 -2.8
721,434 - OKFHMN_04450 0.60 -2.9
721,570 + -0.5
721,694 + fabA OKFHMN_04455 0.23 +0.7
721,923 - fabA OKFHMN_04455 0.64 +1.8
721,965 + fabA OKFHMN_04455 0.72 -2.3
721,969 + fabA OKFHMN_04455 0.73 +1.3
722,117 + -0.4
722,117 + +0.4
722,171 - -0.0
722,225 + fabG OKFHMN_04460 0.14 +0.8

Or see this region's nucleotide sequence