Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04420

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolE and OKFHMN_04420 are separated by 0 nucleotidesOKFHMN_04420 and lolD overlap by 17 nucleotideslolD and OKFHMN_04430 are separated by 10 nucleotides OKFHMN_04415: lolE - ABC transporter permease, at 712,591 to 713,901 lolE OKFHMN_04420: OKFHMN_04420 - Uncharacterized function, at 713,902 to 714,558 _04420 OKFHMN_04425: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 714,542 to 715,249 lolD OKFHMN_04430: OKFHMN_04430 - ATP-binding protein, at 715,260 to 716,213 _04430 Position (kb) 713 714 715Strain fitness (log2 ratio) -1 0 1at 713.003 kb on + strand, within lolEat 713.226 kb on - strand, within lolEat 713.469 kb on - strand, within lolEat 713.469 kb on - strand, within lolEat 713.490 kb on - strand, within lolEat 713.904 kb on - strandat 714.345 kb on - strand, within OKFHMN_04420

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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713,003 + lolE OKFHMN_04415 0.31 -1.0
713,226 - lolE OKFHMN_04415 0.48 +0.6
713,469 - lolE OKFHMN_04415 0.67 +0.5
713,469 - lolE OKFHMN_04415 0.67 +0.7
713,490 - lolE OKFHMN_04415 0.69 -1.0
713,904 - +1.0
714,345 - OKFHMN_04420 0.67 -1.7

Or see this region's nucleotide sequence