Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02620

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsohB and yciK are separated by 219 nucleotidesyciK and cobO overlap by 4 nucleotidescobO and rluB are separated by 39 nucleotides OKFHMN_02615: sohB - protease SohB, at 413,827 to 414,876 sohB OKFHMN_02620: yciK - YciK family oxidoreductase, at 415,096 to 415,854 yciK OKFHMN_02625: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 415,851 to 416,441 cobO OKFHMN_02630: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 416,481 to 417,353 rluB Position (kb) 415 416Strain fitness (log2 ratio) -2 -1 0 1at 414.726 kb on - strand, within sohBat 414.772 kb on - strandat 414.952 kb on + strandat 414.953 kb on - strandat 415.055 kb on + strandat 415.102 kb on + strandat 415.752 kb on + strand, within yciKat 415.900 kb on + strandat 415.910 kb on + strand, within cobOat 415.941 kb on - strand, within cobOat 416.042 kb on + strand, within cobOat 416.241 kb on + strand, within cobOat 416.259 kb on + strand, within cobOat 416.380 kb on + strand, within cobOat 416.493 kb on - strandat 416.493 kb on - strandat 416.847 kb on - strand, within rluB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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414,726 - sohB OKFHMN_02615 0.86 +0.1
414,772 - +0.3
414,952 + +1.5
414,953 - +0.2
415,055 + +0.4
415,102 + -0.2
415,752 + yciK OKFHMN_02620 0.86 +0.1
415,900 + -0.9
415,910 + cobO OKFHMN_02625 0.10 +0.8
415,941 - cobO OKFHMN_02625 0.15 +0.7
416,042 + cobO OKFHMN_02625 0.32 +0.5
416,241 + cobO OKFHMN_02625 0.66 +0.1
416,259 + cobO OKFHMN_02625 0.69 +0.0
416,380 + cobO OKFHMN_02625 0.90 +0.3
416,493 - +0.2
416,493 - +0.1
416,847 - rluB OKFHMN_02630 0.42 -2.2

Or see this region's nucleotide sequence