Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02485

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapD and sapF are separated by 1 nucleotidessapF and araJ are separated by 51 nucleotidesaraJ and tolC are separated by 227 nucleotides OKFHMN_02475: sapD - peptide ABC transporter ATP-binding protein SapD, at 383,355 to 384,347 sapD OKFHMN_02480: sapF - peptide ABC transporter ATP-binding protein SapF, at 384,349 to 385,155 sapF OKFHMN_02485: araJ - Bcr/CflA family drug resistance efflux transporter, at 385,207 to 386,370 araJ OKFHMN_02490: tolC - multidrug transporter, at 386,598 to 387,752 tolC Position (kb) 385 386 387Strain fitness (log2 ratio) -2 -1 0 1at 385.255 kb on - strandat 385.446 kb on + strand, within araJat 385.499 kb on - strand, within araJat 385.861 kb on - strand, within araJat 386.001 kb on - strand, within araJat 386.089 kb on - strand, within araJat 386.089 kb on - strand, within araJat 386.234 kb on - strand, within araJat 386.295 kb on - strandat 386.646 kb on - strandat 386.727 kb on - strand, within tolC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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385,255 - -1.0
385,446 + araJ OKFHMN_02485 0.21 +0.2
385,499 - araJ OKFHMN_02485 0.25 +0.2
385,861 - araJ OKFHMN_02485 0.56 +0.0
386,001 - araJ OKFHMN_02485 0.68 -0.8
386,089 - araJ OKFHMN_02485 0.76 -1.9
386,089 - araJ OKFHMN_02485 0.76 +0.0
386,234 - araJ OKFHMN_02485 0.88 -0.6
386,295 - -1.5
386,646 - -0.6
386,727 - tolC OKFHMN_02490 0.11 -0.1

Or see this region's nucleotide sequence