Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntB and ynaN are separated by 13 nucleotides ynaN and dgcM are separated by 193 nucleotides dgcM and smrA are separated by 20 nucleotides smrA and abgR are separated by 329 nucleotides
OKFHMN_02175: zntB - zinc transporter ZntB, at 326,648 to 327,631
zntB
OKFHMN_02180: ynaN - Protein YnaN, at 327,645 to 327,692
ynaN
OKFHMN_02185: dgcM - diguanylate cyclase DgcM, at 327,886 to 329,118
dgcM
OKFHMN_02190: smrA - DNA endonuclease SmrA, at 329,139 to 329,702
smrA
OKFHMN_02200: abgR - LysR family transcriptional regulator, at 330,032 to 330,940
abgR
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 327.304 kb on - strand, within zntB at 327.434 kb on + strand, within zntB at 327.492 kb on + strand, within zntB at 327.493 kb on - strand, within zntB at 327.493 kb on - strand, within zntB at 327.496 kb on + strand, within zntB at 327.566 kb on - strand at 327.662 kb on - strand, within ynaN at 327.707 kb on - strand at 328.143 kb on - strand, within dgcM at 328.425 kb on + strand, within dgcM at 328.426 kb on - strand, within dgcM at 328.583 kb on + strand, within dgcM at 328.587 kb on + strand, within dgcM at 328.588 kb on - strand, within dgcM at 328.687 kb on + strand, within dgcM at 329.337 kb on - strand, within smrA at 329.705 kb on + strand at 329.706 kb on - strand at 329.706 kb on - strand at 329.722 kb on - strand at 329.764 kb on + strand at 329.765 kb on - strand at 329.765 kb on - strand at 329.765 kb on - strand at 329.765 kb on - strand at 329.864 kb on + strand at 329.920 kb on + strand at 329.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 327,304 - zntB OKFHMN_02175 0.67 +0.1 327,434 + zntB OKFHMN_02175 0.80 -1.8 327,492 + zntB OKFHMN_02175 0.86 -0.5 327,493 - zntB OKFHMN_02175 0.86 +0.5 327,493 - zntB OKFHMN_02175 0.86 +2.2 327,496 + zntB OKFHMN_02175 0.86 +0.2 327,566 - +0.0 327,662 - ynaN OKFHMN_02180 0.35 +1.2 327,707 - +0.4 328,143 - dgcM OKFHMN_02185 0.21 -1.6 328,425 + dgcM OKFHMN_02185 0.44 +0.8 328,426 - dgcM OKFHMN_02185 0.44 -1.4 328,583 + dgcM OKFHMN_02185 0.57 -1.1 328,587 + dgcM OKFHMN_02185 0.57 -2.4 328,588 - dgcM OKFHMN_02185 0.57 -0.9 328,687 + dgcM OKFHMN_02185 0.65 -1.6 329,337 - smrA OKFHMN_02190 0.35 -0.3 329,705 + +0.1 329,706 - -0.3 329,706 - +0.7 329,722 - +0.8 329,764 + +1.1 329,765 - +2.2 329,765 - +0.6 329,765 - -1.3 329,765 - -0.9 329,864 + -0.2 329,920 + +0.2 329,988 + +1.0
Or see this region's nucleotide sequence