Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01245

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeQ and ydeP are separated by 333 nucleotidesydeP and safA are separated by 247 nucleotidessafA and ydeO are separated by 73 nucleotides OKFHMN_01240: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 142,077 to 142,991 ydeQ OKFHMN_01245: ydeP - acid resistance putative oxidoreductase YdeP, at 143,325 to 145,604 ydeP OKFHMN_01250: safA - two-component system connector SafA, at 145,852 to 146,049 safA OKFHMN_01255: ydeO - acid stress response transcriptional regulator YdeO, at 146,123 to 146,884 ydeO Position (kb) 143 144 145 146Strain fitness (log2 ratio) -2 -1 0 1at 142.357 kb on - strand, within ydeQat 142.535 kb on + strand, within ydeQat 143.236 kb on - strandat 143.612 kb on + strand, within ydePat 144.150 kb on + strand, within ydePat 144.279 kb on - strand, within ydePat 144.542 kb on + strand, within ydePat 145.144 kb on + strand, within ydePat 145.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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142,357 - ydeQ OKFHMN_01240 0.31 -1.3
142,535 + ydeQ OKFHMN_01240 0.50 +0.6
143,236 - +0.2
143,612 + ydeP OKFHMN_01245 0.13 +0.6
144,150 + ydeP OKFHMN_01245 0.36 +0.2
144,279 - ydeP OKFHMN_01245 0.42 -0.3
144,542 + ydeP OKFHMN_01245 0.53 +0.2
145,144 + ydeP OKFHMN_01245 0.80 -2.4
145,407 - +1.0

Or see this region's nucleotide sequence