Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00865

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_00860 and gpA1 overlap by 26 nucleotidesgpA1 and OKFHMN_00870 overlap by 4 nucleotidesOKFHMN_00870 and OKFHMN_00875 overlap by 4 nucleotides OKFHMN_00860: OKFHMN_00860 - DNA-packaging protein, at 66,533 to 67,078 _00860 OKFHMN_00865: gpA1 - terminase, at 67,053 to 68,978 gpA1 OKFHMN_00870: OKFHMN_00870 - Lambda prophage-derived head-to-tail joining protein W, at 68,975 to 69,181 _00870 OKFHMN_00875: OKFHMN_00875 - Phage portal protein, at 69,178 to 70,779 _00875 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1at 66.369 kb on + strandat 67.164 kb on + strandat 67.255 kb on - strand, within gpA1at 67.326 kb on + strand, within gpA1at 68.476 kb on - strand, within gpA1

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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66,369 + -1.7
67,164 + +0.5
67,255 - gpA1 OKFHMN_00865 0.10 +0.1
67,326 + gpA1 OKFHMN_00865 0.14 -1.4
68,476 - gpA1 OKFHMN_00865 0.74 +0.5

Or see this region's nucleotide sequence